Variant report

Variant	rs4896625
Chromosome Location	chr6:143542938-143542939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143538181..143539746-chr6:143541338..143543676,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10484581	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs10484582	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs10484583	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs12055523	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs12055848	0.88[AMR][1000 genomes]
rs12176429	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs17072283	1.00[JPT][hapmap]
rs17072288	1.00[JPT][hapmap]
rs17072338	0.96[AMR][1000 genomes]
rs17072347	0.96[AMR][1000 genomes]
rs17072349	0.96[AMR][1000 genomes]
rs17072381	0.88[AMR][1000 genomes]
rs17072390	0.88[AMR][1000 genomes]
rs17072404	0.81[AMR][1000 genomes]
rs17072408	0.81[AMR][1000 genomes]
rs17072410	0.81[AMR][1000 genomes]
rs17629061	1.00[JPT][hapmap]
rs4458714	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs4895603	1.00[AMR][1000 genomes]
rs4895604	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs4896630	0.88[AMR][1000 genomes]
rs4896631	0.88[AMR][1000 genomes]
rs6932032	1.00[JPT][hapmap]
rs7765576	1.00[JPT][hapmap]
rs7769247	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs9321895	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9373380	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9373382	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs9373383	0.81[AMR][1000 genomes]
rs9376728	1.00[JPT][hapmap]
rs9376732	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376733	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376734	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9376735	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9386028	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9386029	1.00[JPT][hapmap];0.88[AMR][1000 genomes]
rs9390062	1.00[JPT][hapmap]
rs9390071	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs9399431	0.81[AMR][1000 genomes]
rs9399432	0.81[AMR][1000 genomes]
rs9403453	1.00[JPT][hapmap]
rs9403454	1.00[JPT][hapmap]
rs9403465	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403467	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403469	1.00[JPT][hapmap];0.96[AMR][1000 genomes]
rs9403470	0.88[AMR][1000 genomes]
rs9403471	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9403472	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9403473	0.81[AMR][1000 genomes]
rs9403474	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs9403476	1.00[JPT][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275228	chr6:143539833-143549921	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:143514400-143545200	Weak transcription	HMEC	breast
3	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143525600-143544200	Weak transcription	HepG2	liver
5	chr6:143525800-143545800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143527400-143552000	Weak transcription	Brain Angular Gyrus	brain
7	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:143535000-143544200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:143535000-143544200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:143535000-143545200	Weak transcription	Pancreas	Pancrea
11	chr6:143535000-143549600	Weak transcription	Lung	lung
12	chr6:143535000-143551000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
14	chr6:143536000-143543000	Weak transcription	Ovary	ovary
15	chr6:143536000-143543000	Weak transcription	Right Atrium	heart
16	chr6:143536200-143546000	Weak transcription	Right Ventricle	heart
17	chr6:143537000-143543000	Weak transcription	Fetal Muscle Leg	muscle
18	chr6:143537800-143547200	Strong transcription	K562	blood
19	chr6:143539000-143543200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:143540800-143545200	Weak transcription	NHEK	skin
21	chr6:143541000-143545400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:143541200-143550800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:143541400-143543200	Weak transcription	Fetal Intestine Small	intestine
24	chr6:143541400-143545200	Weak transcription	Left Ventricle	heart
25	chr6:143541600-143543400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:143541600-143546400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr6:143541800-143544200	Weak transcription	Liver	Liver
28	chr6:143541800-143545800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:143542000-143544600	Enhancers	Colon Smooth Muscle	Colon
30	chr6:143542000-143545400	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:143542000-143545600	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr6:143542200-143544600	Weak transcription	Fetal Intestine Large	intestine
33	chr6:143542400-143543000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:143542400-143543000	Enhancers	Stomach Smooth Muscle	stomach
35	chr6:143542400-143544000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:143542400-143545200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:143542400-143545200	Enhancers	Psoas Muscle	Psoas
38	chr6:143542400-143545400	Enhancers	Fetal Stomach	stomach
39	chr6:143542600-143543000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr6:143542600-143545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr6:143542600-143545200	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr6:143542600-143545400	Enhancers	Fetal Brain Male	brain
43	chr6:143542600-143546200	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:143542800-143543000	Flanking Active TSS	Fetal Heart	heart
45	chr6:143542800-143544400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr6:143542800-143544600	Enhancers	Adipose Nuclei	Adipose
47	chr6:143542800-143545600	Enhancers	Fetal Lung	lung

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