Variant report

Variant	rs12055848
Chromosome Location	chr6:143575980-143575981
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10484581	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10484582	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10484583	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12055523	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12176429	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072338	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072347	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072349	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17072381	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072390	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17072404	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072408	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17072410	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4458714	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4895603	0.88[AMR][1000 genomes]
rs4895604	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4896625	0.88[AMR][1000 genomes]
rs4896630	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4896631	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6932032	0.93[ASN][1000 genomes]
rs7765576	0.92[ASN][1000 genomes]
rs7769247	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9321895	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9373380	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9373382	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9373383	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9376732	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376733	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9376734	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9376735	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9386028	0.85[AMR][1000 genomes]
rs9386029	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9390071	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9399431	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9399432	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403465	0.88[AMR][1000 genomes]
rs9403467	0.88[AMR][1000 genomes]
rs9403469	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9403470	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403471	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403472	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403473	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9403474	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9403476	0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9496541	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981344	chr6:143566840-143579617	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143546000-143576200	Weak transcription	HepG2	liver
4	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
5	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
9	chr6:143565200-143579400	Weak transcription	Ovary	ovary
10	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus
11	chr6:143568000-143578000	Weak transcription	K562	blood
12	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
15	chr6:143570000-143581600	Weak transcription	NHEK	skin
16	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:143571000-143579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143571400-143581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:143573800-143576200	Enhancers	Fetal Stomach	stomach
20	chr6:143574200-143577200	Weak transcription	Left Ventricle	heart
21	chr6:143574400-143583000	Weak transcription	Liver	Liver
22	chr6:143575200-143576200	Enhancers	Fetal Lung	lung
23	chr6:143575400-143576200	Enhancers	Lung	lung
24	chr6:143575800-143576000	ZNF genes & repeats	Fetal Intestine Small	intestine

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