Variant report

Variant	rs17072255
Chromosome Location	chr6:143447328-143447329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr6:143446755-143447426	SK-N-SH	brain:	n/a	chr6:143447198-143447218
2	NFIC	chr6:143446873-143447404	SK-N-SH	brain:	n/a	n/a
3	KAP1	chr6:143446382-143447689	HEK293	kidney:	n/a	n/a
4	POLR2A	chr6:143446944-143447881	U87	brain:	n/a	n/a
5	STAT3	chr6:143447236-143447414	MCF10A-Er-Src	breast:	n/a	n/a
6	SETDB1	chr6:143446638-143447567	U2OS	brain:	n/a	n/a
7	GATA3	chr6:143446716-143447457	SK-N-SH	brain:	n/a	chr6:143446952-143446961 chr6:143446991-143447001
8	POLR2A	chr6:143446978-143447776	U87	brain:	n/a	n/a
9	TCF12	chr6:143446861-143447395	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr6:143446978-143447715	U87	brain:	n/a	n/a
11	POLR2A	chr6:143446938-143447881	U87	brain:	n/a	n/a

Variant related genes	Relation type
AIG1	TF binding region

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10434867	0.96[ASN][1000 genomes]
rs10434868	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10434889	0.92[ASN][1000 genomes]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12055784	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17628922	0.96[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap]
rs4896620	1.00[TSI][hapmap]
rs55966095	1.00[EUR][1000 genomes]
rs59260853	1.00[EUR][1000 genomes]
rs59866066	1.00[EUR][1000 genomes]
rs6905322	1.00[TSI][hapmap]
rs6919707	1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[ASN][1000 genomes]
rs73777873	0.96[ASN][1000 genomes]
rs73777876	0.96[ASN][1000 genomes]
rs73777879	1.00[EUR][1000 genomes]
rs73777888	1.00[ASN][1000 genomes]
rs7775541	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373374	1.00[ASN][1000 genomes]
rs9373375	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9376723	0.96[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386020	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386024	1.00[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390059	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9390060	1.00[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap]
rs9399421	0.96[ASN][1000 genomes]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399424	1.00[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403445	0.96[ASN][1000 genomes]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9403449	1.00[ASN][1000 genomes]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9484706	1.00[ASN][1000 genomes]
rs9496527	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496530	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496531	0.88[YRI][hapmap]

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
2	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
4	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143432000-143452000	Weak transcription	Ovary	ovary
6	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143433400-143447600	Weak transcription	HMEC	breast
9	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
11	chr6:143441000-143451800	Weak transcription	HepG2	liver
12	chr6:143441200-143479000	Weak transcription	NHLF	lung
13	chr6:143442600-143450000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143442600-143450400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:143442600-143451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:143442600-143451600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:143442800-143450600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:143442800-143450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:143442800-143452000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:143442800-143452000	Weak transcription	NHEK	skin
21	chr6:143443000-143451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:143443200-143452000	Weak transcription	Primary T cells from cord blood	blood
23	chr6:143443600-143462200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:143443800-143447800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:143443800-143450000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:143443800-143452600	Weak transcription	Brain Angular Gyrus	brain
27	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:143444000-143447600	Weak transcription	Spleen	Spleen
29	chr6:143444000-143449000	Strong transcription	Fetal Intestine Large	intestine
30	chr6:143444000-143449400	Weak transcription	Fetal Stomach	stomach
31	chr6:143444000-143449800	Enhancers	NHDF-Ad	bronchial
32	chr6:143444000-143451800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:143444200-143452000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr6:143444200-143452000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:143444600-143451000	Weak transcription	Adipose Nuclei	Adipose
36	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr6:143445400-143451600	Strong transcription	Liver	Liver
38	chr6:143445600-143449400	Weak transcription	Esophagus	oesophagus
39	chr6:143445800-143447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:143445800-143451800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:143445800-143452000	Weak transcription	Fetal Heart	heart
42	chr6:143445800-143452000	Weak transcription	K562	blood
43	chr6:143445800-143452600	Weak transcription	Aorta	Aorta
44	chr6:143445800-143479200	Weak transcription	Lung	lung
45	chr6:143446000-143450200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr6:143446000-143451400	Weak transcription	Fetal Brain Male	brain
47	chr6:143446400-143448000	Flanking Active TSS	Osteobl	bone
48	chr6:143446400-143451600	Weak transcription	Fetal Brain Female	brain
49	chr6:143446600-143447800	Enhancers	HSMM	muscle
50	chr6:143446600-143448000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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