The 2.0 version of rSNPBase

Variant report

Variant rs73777888
Chromosome Location chr6:143462252-143462253
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:67 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143441200-143479000 Weak transcription NHLF lung
2 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr6:143445800-143479200 Weak transcription Lung lung
5 chr6:143448400-143487400 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr6:143452000-143497000 Weak transcription Fetal Stomach stomach
7 chr6:143452200-143477800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
8 chr6:143452800-143463800 Weak transcription H1 Cell Line embryonic stem cell
9 chr6:143453000-143464400 Weak transcription HSMM muscle
10 chr6:143453000-143465400 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr6:143453000-143474200 Weak transcription ES-I3 Cell Line embryonic stem cell
12 chr6:143453000-143481600 Weak transcription Right Ventricle heart
13 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
14 chr6:143453000-143508600 Weak transcription Fetal Lung lung
15 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
16 chr6:143453200-143470800 Weak transcription Primary neutrophils fromperipheralblood blood
17 chr6:143454200-143464000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
18 chr6:143456200-143463600 Weak transcription Psoas Muscle Psoas
19 chr6:143456400-143462600 Weak transcription Sigmoid Colon Sigmoid Colon
20 chr6:143457000-143465400 Weak transcription HSMMtube muscle
21 chr6:143457200-143470800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr6:143457800-143463800 Strong transcription Liver Liver
23 chr6:143458200-143486600 Weak transcription Aorta Aorta
24 chr6:143458400-143463400 Weak transcription Brain Substantia Nigra brain
25 chr6:143458400-143463600 Weak transcription Primary T cells fromperipheralblood blood
26 chr6:143458600-143462600 Weak transcription Primary T helper naive cells fromperipheralblood blood
27 chr6:143458600-143464000 Weak transcription Fetal Muscle Leg muscle
28 chr6:143458600-143468000 Weak transcription Fetal Intestine Small intestine
29 chr6:143458600-143479200 Weak transcription Gastric stomach
30 chr6:143458800-143477800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr6:143458800-143529200 Weak transcription Primary T cells from cord blood blood
32 chr6:143459200-143463600 Weak transcription NH-A brain
33 chr6:143459200-143477800 Weak transcription Left Ventricle heart
34 chr6:143459200-143477800 Weak transcription NHEK skin
35 chr6:143459200-143479000 Weak transcription Ovary ovary
36 chr6:143459200-143479200 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr6:143459200-143484200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr6:143459400-143468200 Weak transcription HepG2 liver
39 chr6:143459400-143479200 Weak transcription Adipose Nuclei Adipose
40 chr6:143459600-143484000 Weak transcription HUES64 Cell Line embryonic stem cell
41 chr6:143459600-143486600 Weak transcription Duodenum Mucosa Duodenum
42 chr6:143459600-143505400 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr6:143459800-143477800 Weak transcription HMEC breast
44 chr6:143460400-143462600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
45 chr6:143460400-143464000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr6:143461000-143462600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
47 chr6:143461000-143463600 Strong transcription Fetal Intestine Large intestine
48 chr6:143461000-143487400 Weak transcription Brain Cingulate Gyrus brain
49 chr6:143461400-143463000 Enhancers Fetal Heart heart
50 chr6:143461600-143462600 Strong transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015