Variant report

Variant	rs10434867
Chromosome Location	chr6:143427439-143427440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143420247..143422614-chr6:143426577..143428397,2	K562	blood:

Variant related genes	Relation type
ENSG00000225752	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10434868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434889	0.88[ASN][1000 genomes]
rs11155280	1.00[ASN][1000 genomes]
rs17072228	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072255	0.96[ASN][1000 genomes]
rs17628867	0.82[ASN][1000 genomes]
rs17628922	1.00[ASN][1000 genomes]
rs2092237	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139045	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56299540	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56860246	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60976225	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906306	1.00[EUR][1000 genomes]
rs6906865	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6919707	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927915	0.96[ASN][1000 genomes]
rs6935786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936376	0.96[ASN][1000 genomes]
rs73777873	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777876	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777888	0.96[ASN][1000 genomes]
rs7775541	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321893	0.96[ASN][1000 genomes]
rs9373372	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9373374	0.96[ASN][1000 genomes]
rs9373375	0.96[ASN][1000 genomes]
rs9376721	0.83[ASN][1000 genomes]
rs9376722	0.83[ASN][1000 genomes]
rs9376723	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376724	0.96[ASN][1000 genomes]
rs9376725	0.96[ASN][1000 genomes]
rs9386023	0.96[ASN][1000 genomes]
rs9386024	0.96[ASN][1000 genomes]
rs9390052	0.83[ASN][1000 genomes]
rs9390055	0.82[ASN][1000 genomes]
rs9390056	1.00[ASN][1000 genomes]
rs9390057	0.96[ASN][1000 genomes]
rs9390058	0.96[ASN][1000 genomes]
rs9390059	0.96[ASN][1000 genomes]
rs9390060	0.96[ASN][1000 genomes]
rs9399420	0.82[ASN][1000 genomes]
rs9399421	1.00[ASN][1000 genomes]
rs9399422	0.96[ASN][1000 genomes]
rs9399424	0.96[ASN][1000 genomes]
rs9403440	0.83[ASN][1000 genomes]
rs9403441	0.83[ASN][1000 genomes]
rs9403444	1.00[ASN][1000 genomes]
rs9403445	1.00[ASN][1000 genomes]
rs9403446	0.96[ASN][1000 genomes]
rs9403449	0.96[ASN][1000 genomes]
rs9484706	0.96[ASN][1000 genomes]
rs9496530	0.96[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143386400-143431800	Weak transcription	NHEK	skin
2	chr6:143389600-143437000	Weak transcription	HSMM	muscle
3	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143397400-143431600	Weak transcription	HMEC	breast
5	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
6	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
7	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:143419200-143427800	Weak transcription	Small Intestine	intestine
10	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
11	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:143421400-143428600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr6:143424000-143427600	Weak transcription	HepG2	liver
15	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr6:143425200-143429200	Weak transcription	HSMMtube	muscle
17	chr6:143425800-143429600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:143426000-143428200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:143426400-143431800	Weak transcription	NH-A	brain
21	chr6:143426600-143428000	Weak transcription	Psoas Muscle	Psoas
22	chr6:143427200-143427600	Enhancers	Left Ventricle	heart
23	chr6:143427200-143428800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:143427200-143431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:143427400-143427600	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr6:143427400-143427600	Enhancers	Ovary	ovary
27	chr6:143427400-143428000	Enhancers	K562	blood
28	chr6:143427400-143430200	Enhancers	Adipose Nuclei	Adipose
29	chr6:143427400-143431200	Enhancers	Liver	Liver

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