Variant report

Variant	rs6906865
Chromosome Location	chr6:143432876-143432877
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143424126..143427059-chr6:143431274..143435341,4	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10434867	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10434868	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10452656	0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072213	1.00[EUR][1000 genomes]
rs17072228	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2092237	0.80[AMR][1000 genomes]
rs2092238	0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2876548	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56139045	0.80[AMR][1000 genomes]
rs56299540	0.80[AMR][1000 genomes]
rs56860246	0.80[AMR][1000 genomes]
rs56887572	1.00[EUR][1000 genomes]
rs58798749	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60445283	1.00[EUR][1000 genomes]
rs60976225	0.84[AMR][1000 genomes]
rs61171267	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6570546	1.00[EUR][1000 genomes]
rs6570548	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6907970	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6914766	1.00[EUR][1000 genomes]
rs6919707	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6925127	1.00[EUR][1000 genomes]
rs6932133	1.00[EUR][1000 genomes]
rs6935786	0.83[AMR][1000 genomes]
rs6937052	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777869	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73777870	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73777871	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73777873	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73777876	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7748623	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7775541	0.93[YRI][hapmap];0.82[AFR][1000 genomes]
rs9373372	0.80[AMR][1000 genomes]
rs9376723	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143389600-143437000	Weak transcription	HSMM	muscle
2	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
3	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
4	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
8	chr6:143428000-143437800	Weak transcription	K562	blood
9	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:143429200-143433400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine
12	chr6:143429600-143434000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:143430200-143435600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
15	chr6:143431200-143433200	Weak transcription	Liver	Liver
16	chr6:143431400-143433000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:143431400-143433000	Enhancers	NHDF-Ad	bronchial
18	chr6:143431400-143433400	Weak transcription	HepG2	liver
19	chr6:143431400-143433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:143431600-143433000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:143431600-143433000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:143431600-143433400	Weak transcription	Fetal Heart	heart
23	chr6:143431600-143433400	Enhancers	HMEC	breast
24	chr6:143431800-143433200	Enhancers	NHEK	skin
25	chr6:143431800-143433400	Enhancers	NH-A	brain
26	chr6:143432000-143433800	Enhancers	Osteobl	bone
27	chr6:143432000-143436800	Weak transcription	Fetal Brain Male	brain
28	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:143432000-143452000	Weak transcription	Ovary	ovary
30	chr6:143432200-143433000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:143432600-143433000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--

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