Variant report

Variant	rs56299540
Chromosome Location	chr6:143410553-143410554
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10434867	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10434868	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12055784	1.00[ASN][1000 genomes]
rs17072228	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2092237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139045	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56860246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60976225	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6570548	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906306	1.00[EUR][1000 genomes]
rs6906865	0.80[AMR][1000 genomes]
rs6919707	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935786	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777873	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777876	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775541	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9373371	0.85[ASN][1000 genomes]
rs9373372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9373373	1.00[ASN][1000 genomes]
rs9376720	0.85[ASN][1000 genomes]
rs9376721	0.82[ASN][1000 genomes]
rs9376722	0.82[ASN][1000 genomes]
rs9376723	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9386017	0.85[ASN][1000 genomes]
rs9386020	1.00[ASN][1000 genomes]
rs9386022	1.00[ASN][1000 genomes]
rs9390044	0.85[ASN][1000 genomes]
rs9390045	0.85[ASN][1000 genomes]
rs9390048	0.85[ASN][1000 genomes]
rs9390049	0.85[ASN][1000 genomes]
rs9390050	1.00[ASN][1000 genomes]
rs9390051	1.00[ASN][1000 genomes]
rs9390052	0.82[ASN][1000 genomes]
rs9403436	1.00[ASN][1000 genomes]
rs9403437	1.00[ASN][1000 genomes]
rs9403438	1.00[ASN][1000 genomes]
rs9403439	1.00[ASN][1000 genomes]
rs9403440	0.82[ASN][1000 genomes]
rs9403441	0.82[ASN][1000 genomes]
rs9403442	1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143389800-143418800	Weak transcription	Osteobl	bone
5	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143397400-143431600	Weak transcription	HMEC	breast
7	chr6:143402000-143412000	Weak transcription	Brain Angular Gyrus	brain
8	chr6:143402200-143418400	Weak transcription	K562	blood
9	chr6:143403200-143417400	Weak transcription	Stomach Mucosa	stomach
10	chr6:143404000-143411600	Weak transcription	Liver	Liver
11	chr6:143404000-143417800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:143408200-143418600	Weak transcription	Left Ventricle	heart
14	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
15	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
16	chr6:143408800-143411800	Weak transcription	Psoas Muscle	Psoas
17	chr6:143408800-143417200	Weak transcription	Fetal Intestine Small	intestine
18	chr6:143409800-143413600	Weak transcription	HepG2	liver

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