Variant report
| Variant | rs9390048 |
|---|---|
| Chromosome Location | chr6:143371080-143371081 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:143369324..143371872-chr6:143373183..143375042,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs12055784 | 0.85[ASN][1000 genomes] |
| rs1413625 | 0.81[ASN][1000 genomes] |
| rs56299540 | 0.85[ASN][1000 genomes] |
| rs60976225 | 0.85[ASN][1000 genomes] |
| rs9373371 | 1.00[ASN][1000 genomes] |
| rs9373372 | 0.85[ASN][1000 genomes] |
| rs9373373 | 0.85[ASN][1000 genomes] |
| rs9376720 | 1.00[ASN][1000 genomes] |
| rs9386017 | 1.00[ASN][1000 genomes] |
| rs9386018 | 0.90[ASN][1000 genomes] |
| rs9386020 | 0.85[ASN][1000 genomes] |
| rs9386022 | 0.85[ASN][1000 genomes] |
| rs9390041 | 0.90[ASN][1000 genomes] |
| rs9390042 | 0.90[ASN][1000 genomes] |
| rs9390044 | 1.00[ASN][1000 genomes] |
| rs9390045 | 1.00[ASN][1000 genomes] |
| rs9390049 | 1.00[ASN][1000 genomes] |
| rs9390050 | 0.85[ASN][1000 genomes] |
| rs9390051 | 0.85[ASN][1000 genomes] |
| rs9403427 | 0.90[ASN][1000 genomes] |
| rs9403428 | 0.90[ASN][1000 genomes] |
| rs9403436 | 0.85[ASN][1000 genomes] |
| rs9403437 | 0.85[ASN][1000 genomes] |
| rs9403438 | 0.85[ASN][1000 genomes] |
| rs9403439 | 0.85[ASN][1000 genomes] |
| rs9403442 | 0.85[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:143356800-143377000 | Weak transcription | HepG2 | liver |
