Variant report

Variant	rs9390045
Chromosome Location	chr6:143359029-143359030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HIVEP2-2	chr6:143358126-143359214	ENSG00000229017.2
2	lnc-AIG1-5	chr6:143358752-143362819	NONHSAT115335

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12055784	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17629061	1.00[CHB][hapmap]
rs56299540	0.85[ASN][1000 genomes]
rs60976225	0.85[ASN][1000 genomes]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9373371	1.00[ASN][1000 genomes]
rs9373372	0.85[ASN][1000 genomes]
rs9373373	0.85[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376720	1.00[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376728	1.00[CHB][hapmap]
rs9386017	1.00[ASN][1000 genomes]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9386022	0.85[ASN][1000 genomes]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390041	0.90[ASN][1000 genomes]
rs9390042	0.90[ASN][1000 genomes]
rs9390044	1.00[ASN][1000 genomes]
rs9390048	1.00[ASN][1000 genomes]
rs9390049	1.00[ASN][1000 genomes]
rs9390050	0.85[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390062	1.00[CHB][hapmap]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403427	0.90[ASN][1000 genomes]
rs9403428	0.90[ASN][1000 genomes]
rs9403436	0.85[ASN][1000 genomes]
rs9403437	0.85[ASN][1000 genomes]
rs9403438	0.85[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143360000	Weak transcription	GM12878-XiMat	blood
2	chr6:143356800-143377000	Weak transcription	HepG2	liver
3	chr6:143358000-143359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:143358200-143359600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:143358600-143359200	Enhancers	HSMM	muscle
6	chr6:143359000-143360000	Weak transcription	K562	blood

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