Variant report

Variant	rs9390049
Chromosome Location	chr6:143376520-143376521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143375950..143378205-chr6:143555143..143557355,2	K562	blood:
2	chr6:143372247..143374306-chr6:143375405..143377390,2	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12055784	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17629061	1.00[CHB][hapmap]
rs56299540	0.85[ASN][1000 genomes]
rs60976225	0.85[ASN][1000 genomes]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9373371	1.00[ASN][1000 genomes]
rs9373372	0.85[ASN][1000 genomes]
rs9373373	0.85[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376720	1.00[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376728	1.00[CHB][hapmap]
rs9386017	1.00[ASN][1000 genomes]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9386022	0.85[ASN][1000 genomes]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390041	0.90[ASN][1000 genomes]
rs9390042	0.90[ASN][1000 genomes]
rs9390044	1.00[ASN][1000 genomes]
rs9390045	1.00[ASN][1000 genomes]
rs9390048	1.00[ASN][1000 genomes]
rs9390050	0.85[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390062	1.00[CHB][hapmap]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403427	0.90[ASN][1000 genomes]
rs9403428	0.90[ASN][1000 genomes]
rs9403436	0.85[ASN][1000 genomes]
rs9403437	0.85[ASN][1000 genomes]
rs9403438	0.85[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143377000	Weak transcription	HepG2	liver
2	chr6:143372000-143380400	Weak transcription	K562	blood
3	chr6:143373600-143380800	Weak transcription	GM12878-XiMat	blood
4	chr6:143374800-143380800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:143375200-143380000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143375200-143381200	Weak transcription	Aorta	Aorta
7	chr6:143375600-143379600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:143375800-143377200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:143375800-143377200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:143376000-143380600	Weak transcription	Adipose Nuclei	Adipose
11	chr6:143376200-143380800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:143376400-143377200	Enhancers	H9 Cell Line	embryonic stem cell
13	chr6:143376400-143378600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:143376400-143380200	Weak transcription	Fetal Intestine Large	intestine

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