Variant report

Variant	rs9390058
Chromosome Location	chr6:143456406-143456407
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143456250..143457963-chr6:143485705..143488579,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10434867	0.96[ASN][1000 genomes]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10434889	0.92[ASN][1000 genomes]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12055784	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17628922	0.96[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73777873	0.96[ASN][1000 genomes]
rs73777876	0.96[ASN][1000 genomes]
rs73777888	1.00[ASN][1000 genomes]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9373374	1.00[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376723	0.96[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9386024	1.00[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390060	1.00[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap]
rs9399421	0.96[ASN][1000 genomes]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9399424	1.00[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403445	0.96[ASN][1000 genomes]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403449	1.00[ASN][1000 genomes]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9484706	1.00[ASN][1000 genomes]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143441200-143479000	Weak transcription	NHLF	lung
2	chr6:143443600-143462200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143445800-143479200	Weak transcription	Lung	lung
6	chr6:143448000-143458600	Weak transcription	NH-A	brain
7	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:143451000-143460400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:143452000-143458800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
11	chr6:143452200-143458000	Weak transcription	Left Ventricle	heart
12	chr6:143452200-143458200	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:143452200-143477800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143452400-143458000	Weak transcription	HepG2	liver
15	chr6:143452800-143458200	Weak transcription	NHEK	skin
16	chr6:143452800-143461400	Weak transcription	Fetal Heart	heart
17	chr6:143452800-143461800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:143452800-143463800	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:143453000-143456600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:143453000-143457600	Weak transcription	K562	blood
21	chr6:143453000-143457800	Weak transcription	Liver	Liver
22	chr6:143453000-143457800	Weak transcription	Fetal Intestine Large	intestine
23	chr6:143453000-143458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:143453000-143458000	Weak transcription	Fetal Intestine Small	intestine
25	chr6:143453000-143458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:143453000-143458200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:143453000-143458200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:143453000-143458600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr6:143453000-143459200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:143453000-143460600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr6:143453000-143461800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:143453000-143462000	Weak transcription	Brain Angular Gyrus	brain
33	chr6:143453000-143462000	Weak transcription	Colon Smooth Muscle	Colon
34	chr6:143453000-143464400	Weak transcription	HSMM	muscle
35	chr6:143453000-143465400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:143453000-143474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:143453000-143481600	Weak transcription	Right Ventricle	heart
38	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
39	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
40	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr6:143453200-143457600	Weak transcription	HMEC	breast
42	chr6:143453200-143458200	Weak transcription	Adipose Nuclei	Adipose
43	chr6:143453200-143460800	Weak transcription	Fetal Kidney	kidney
44	chr6:143453200-143470800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr6:143453400-143458000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:143454200-143464000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:143454600-143458000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:143455000-143458400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr6:143455600-143458000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:143455600-143460000	Weak transcription	Brain Hippocampus Middle	brain

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