Variant report

Variant	rs1413625
Chromosome Location	chr6:143386578-143386579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143385359..143387235-chr6:143389845..143392358,2	MCF-7	breast:
2	chr6:143381903..143384616-chr6:143384712..143387025,2	MCF-7	breast:
3	chr6:143384099..143386737-chr6:143410836..143413520,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12055784	1.00[JPT][hapmap]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17629061	1.00[CHB][hapmap]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9373371	0.81[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376720	0.81[ASN][1000 genomes]
rs9376721	0.87[ASN][1000 genomes]
rs9376722	0.87[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9376728	1.00[CHB][hapmap]
rs9386017	0.81[ASN][1000 genomes]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390044	0.81[ASN][1000 genomes]
rs9390045	0.81[ASN][1000 genomes]
rs9390048	0.81[ASN][1000 genomes]
rs9390049	0.81[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390062	1.00[CHB][hapmap]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403440	0.87[ASN][1000 genomes]
rs9403441	0.87[ASN][1000 genomes]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9496516	0.83[ASN][1000 genomes]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
2	chr6:143382600-143426800	Weak transcription	Ovary	ovary
3	chr6:143382800-143389000	Weak transcription	NH-A	brain
4	chr6:143382800-143394800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:143383200-143386600	Enhancers	Fetal Intestine Large	intestine
6	chr6:143383200-143386800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:143383400-143389000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:143383600-143386800	Enhancers	HMEC	breast
9	chr6:143383800-143387200	Enhancers	HepG2	liver
10	chr6:143383800-143389000	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:143384200-143386600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:143384200-143394600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
15	chr6:143384800-143388600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:143384800-143389000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:143385600-143389000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:143385600-143392000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr6:143385600-143394600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:143385800-143386800	Enhancers	Liver	Liver
21	chr6:143385800-143388800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:143385800-143389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:143386000-143387000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:143386000-143387200	Enhancers	Osteobl	bone
25	chr6:143386000-143389000	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:143386000-143389000	Weak transcription	HSMM	muscle
27	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:143386200-143388600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr6:143386200-143396400	Weak transcription	Left Ventricle	heart
30	chr6:143386400-143386600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:143386400-143387000	Weak transcription	Fetal Intestine Small	intestine
32	chr6:143386400-143387400	ZNF genes & repeats	K562	blood
33	chr6:143386400-143389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr6:143386400-143389200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:143386400-143390800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:143386400-143391000	Weak transcription	Small Intestine	intestine
37	chr6:143386400-143431800	Weak transcription	NHEK	skin

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