Variant report

Variant	rs9403441
Chromosome Location	chr6:143420186-143420187
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143380360..143383135-chr6:143419017..143422482,3	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

rs_ID	r²[population]
rs10434867	0.83[ASN][1000 genomes]
rs10434868	0.83[ASN][1000 genomes]
rs11155280	0.83[ASN][1000 genomes]
rs12055784	0.82[ASN][1000 genomes]
rs1413625	0.87[ASN][1000 genomes]
rs17628922	0.83[ASN][1000 genomes]
rs56299540	0.82[ASN][1000 genomes]
rs60976225	0.82[ASN][1000 genomes]
rs6919707	0.83[ASN][1000 genomes]
rs6935786	0.83[ASN][1000 genomes]
rs73777873	0.83[ASN][1000 genomes]
rs73777876	0.83[ASN][1000 genomes]
rs7775541	0.83[ASN][1000 genomes]
rs9373372	0.82[ASN][1000 genomes]
rs9373373	0.82[ASN][1000 genomes]
rs9376721	1.00[ASN][1000 genomes]
rs9376722	1.00[ASN][1000 genomes]
rs9376723	0.83[ASN][1000 genomes]
rs9386020	0.82[ASN][1000 genomes]
rs9386022	0.82[ASN][1000 genomes]
rs9390050	0.82[ASN][1000 genomes]
rs9390051	0.82[ASN][1000 genomes]
rs9390052	1.00[ASN][1000 genomes]
rs9390056	0.83[ASN][1000 genomes]
rs9399421	0.83[ASN][1000 genomes]
rs9403436	0.82[ASN][1000 genomes]
rs9403437	0.82[ASN][1000 genomes]
rs9403438	0.82[ASN][1000 genomes]
rs9403439	0.82[ASN][1000 genomes]
rs9403440	1.00[ASN][1000 genomes]
rs9403442	0.82[ASN][1000 genomes]
rs9403444	0.83[ASN][1000 genomes]
rs9403445	0.83[ASN][1000 genomes]
rs9496516	0.96[ASN][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143397400-143431600	Weak transcription	HMEC	breast
6	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
8	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
9	chr6:143412400-143420400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:143416800-143420600	Weak transcription	Liver	Liver
11	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:143419000-143426000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:143419000-143427000	Weak transcription	Spleen	Spleen
15	chr6:143419200-143420400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:143419200-143425800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:143419200-143427800	Weak transcription	Small Intestine	intestine
18	chr6:143419400-143427400	Weak transcription	K562	blood
19	chr6:143419800-143420200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:143419800-143420200	Enhancers	GM12878-XiMat	blood
21	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
22	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:143420000-143420200	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr6:143420000-143420800	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links