Variant report

Variant	rs73777876
Chromosome Location	chr6:143438411-143438412
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143437209..143439672-chr6:143441874..143443715,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10434867	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434868	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434889	0.88[ASN][1000 genomes]
rs11155280	1.00[ASN][1000 genomes]
rs17072228	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072255	0.96[ASN][1000 genomes]
rs17628867	0.82[ASN][1000 genomes]
rs17628922	1.00[ASN][1000 genomes]
rs2092237	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139045	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56299540	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56860246	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60976225	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570548	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906306	1.00[EUR][1000 genomes]
rs6906865	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6919707	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927915	0.96[ASN][1000 genomes]
rs6935786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936376	0.96[ASN][1000 genomes]
rs73777873	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777888	0.96[ASN][1000 genomes]
rs7775541	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321893	0.96[ASN][1000 genomes]
rs9373372	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9373374	0.96[ASN][1000 genomes]
rs9373375	0.96[ASN][1000 genomes]
rs9376721	0.83[ASN][1000 genomes]
rs9376722	0.83[ASN][1000 genomes]
rs9376723	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376724	0.96[ASN][1000 genomes]
rs9376725	0.96[ASN][1000 genomes]
rs9386023	0.96[ASN][1000 genomes]
rs9386024	0.96[ASN][1000 genomes]
rs9390052	0.83[ASN][1000 genomes]
rs9390055	0.82[ASN][1000 genomes]
rs9390056	1.00[ASN][1000 genomes]
rs9390057	0.96[ASN][1000 genomes]
rs9390058	0.96[ASN][1000 genomes]
rs9390059	0.96[ASN][1000 genomes]
rs9390060	0.96[ASN][1000 genomes]
rs9399420	0.82[ASN][1000 genomes]
rs9399421	1.00[ASN][1000 genomes]
rs9399422	0.96[ASN][1000 genomes]
rs9399424	0.96[ASN][1000 genomes]
rs9403440	0.83[ASN][1000 genomes]
rs9403441	0.83[ASN][1000 genomes]
rs9403444	1.00[ASN][1000 genomes]
rs9403445	1.00[ASN][1000 genomes]
rs9403446	0.96[ASN][1000 genomes]
rs9403449	0.96[ASN][1000 genomes]
rs9484706	0.96[ASN][1000 genomes]
rs9496530	0.96[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
7	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
9	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:143432000-143452000	Weak transcription	Ovary	ovary
11	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:143433200-143441600	Weak transcription	NHEK	skin
16	chr6:143433400-143446400	Weak transcription	NH-A	brain
17	chr6:143433400-143447600	Weak transcription	HMEC	breast
18	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:143435400-143440600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:143436000-143440000	Weak transcription	Adipose Nuclei	Adipose
21	chr6:143436200-143438800	Weak transcription	Liver	Liver
22	chr6:143437000-143440200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:143437000-143440200	Weak transcription	Fetal Brain Male	brain
24	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:143437800-143439200	Enhancers	K562	blood
26	chr6:143438000-143439000	Weak transcription	HepG2	liver
27	chr6:143438200-143438600	Enhancers	Right Atrium	heart
28	chr6:143438400-143439200	Weak transcription	Fetal Intestine Large	intestine
29	chr6:143438400-143441400	Enhancers	Fetal Intestine Small	intestine

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