Variant report

Variant	rs17072228
Chromosome Location	chr6:143429827-143429828
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143416987..143419497-chr6:143429093..143431319,2	K562	blood:
2	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
3	chr6:143427658..143429205-chr6:143429349..143432332,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10434867	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10434868	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10452656	0.86[YRI][hapmap]
rs2092237	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2092238	0.84[YRI][hapmap]
rs2876548	0.88[YRI][hapmap]
rs56139045	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56299540	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56860246	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60976225	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570548	0.97[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906306	1.00[EUR][1000 genomes]
rs6906865	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6919707	0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935786	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777876	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775541	0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9373372	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9376723	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143386400-143431800	Weak transcription	NHEK	skin
2	chr6:143389600-143437000	Weak transcription	HSMM	muscle
3	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143397400-143431600	Weak transcription	HMEC	breast
5	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
6	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
7	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:143426400-143431800	Weak transcription	NH-A	brain
14	chr6:143427200-143431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:143427400-143430200	Enhancers	Adipose Nuclei	Adipose
16	chr6:143427400-143431200	Enhancers	Liver	Liver
17	chr6:143427600-143431200	Weak transcription	Ovary	ovary
18	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
19	chr6:143428000-143437800	Weak transcription	K562	blood
20	chr6:143428200-143430000	Enhancers	Fetal Lung	lung
21	chr6:143428200-143430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:143428600-143430000	Enhancers	Osteobl	bone
24	chr6:143428600-143430200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:143429000-143430000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr6:143429200-143430200	Enhancers	HSMMtube	muscle
27	chr6:143429200-143431600	Weak transcription	Fetal Brain Male	brain
28	chr6:143429200-143433400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr6:143429400-143430400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:143429400-143430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine
32	chr6:143429600-143434000	Weak transcription	Fetal Intestine Large	intestine
33	chr6:143429800-143430000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:143429800-143431000	Weak transcription	HepG2	liver
35	chr6:143429800-143431400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links