Variant report

Variant	rs2876548
Chromosome Location	chr6:143418579-143418580
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143416987..143419497-chr6:143429093..143431319,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10434868	0.93[YRI][hapmap]
rs10452656	0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072213	1.00[EUR][1000 genomes]
rs17072228	0.88[YRI][hapmap]
rs2092238	0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56887572	1.00[EUR][1000 genomes]
rs58798749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60445283	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61171267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570546	1.00[EUR][1000 genomes]
rs6570548	0.90[YRI][hapmap]
rs6906865	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6907970	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914766	1.00[EUR][1000 genomes]
rs6919707	0.93[YRI][hapmap]
rs6925127	1.00[EUR][1000 genomes]
rs6932133	1.00[EUR][1000 genomes]
rs6937052	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73777869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777870	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777871	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775541	0.93[YRI][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143389800-143418800	Weak transcription	Osteobl	bone
5	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143397400-143431600	Weak transcription	HMEC	breast
7	chr6:143404000-143422600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:143408200-143418600	Weak transcription	Left Ventricle	heart
9	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
10	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
11	chr6:143412400-143420400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:143414200-143419800	Weak transcription	Brain Substantia Nigra	brain
13	chr6:143416800-143420600	Weak transcription	Liver	Liver
14	chr6:143417200-143419600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:143417400-143418600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:143417400-143418600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr6:143417400-143418600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr6:143417400-143418800	Enhancers	GM12878-XiMat	blood
19	chr6:143417600-143418600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:143417600-143418800	Enhancers	Primary T cells from cord blood	blood
21	chr6:143417600-143418800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr6:143417600-143419200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr6:143417600-143419400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:143417600-143419800	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:143417800-143418600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:143417800-143418800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:143417800-143419000	Weak transcription	Stomach Mucosa	stomach
28	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
29	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:143418000-143418600	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:143418000-143419200	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr6:143418200-143419400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr6:143418200-143419600	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:143418400-143418600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:143418400-143419000	Enhancers	Primary B cells from cord blood	blood
36	chr6:143418400-143419000	Enhancers	Fetal Muscle Leg	muscle
37	chr6:143418400-143419200	Enhancers	Fetal Intestine Small	intestine
38	chr6:143418400-143419400	Enhancers	K562	blood
39	chr6:143418400-143419600	Enhancers	Adipose Nuclei	Adipose
40	chr6:143418400-143419800	Enhancers	Duodenum Mucosa	Duodenum
41	chr6:143418400-143420000	Enhancers	Primary B cells from peripheral blood	blood

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