Variant report

Variant	rs6907970
Chromosome Location	chr6:143396389-143396390
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10452656	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072213	1.00[EUR][1000 genomes]
rs2092238	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56887572	1.00[EUR][1000 genomes]
rs58798749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60445283	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61171267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570546	1.00[EUR][1000 genomes]
rs6906865	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6914766	1.00[EUR][1000 genomes]
rs6925127	1.00[EUR][1000 genomes]
rs6932133	1.00[EUR][1000 genomes]
rs6937052	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73777869	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777870	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777871	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748623	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386000-143403800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143386200-143396400	Weak transcription	Left Ventricle	heart
6	chr6:143386400-143431800	Weak transcription	NHEK	skin
7	chr6:143389600-143400000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr6:143389600-143437000	Weak transcription	HSMM	muscle
9	chr6:143389800-143400000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:143389800-143418800	Weak transcription	Osteobl	bone
11	chr6:143391800-143396600	Weak transcription	Small Intestine	intestine
12	chr6:143394600-143398000	Weak transcription	Gastric	stomach
13	chr6:143394800-143396600	Flanking Active TSS	Liver	Liver
14	chr6:143395000-143396600	ZNF genes & repeats	HepG2	liver
15	chr6:143395800-143396600	Weak transcription	Fetal Intestine Large	intestine
16	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143396200-143397000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links