Variant report

Variant	rs17072213
Chromosome Location	chr6:143424290-143424291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
2	chr6:143419332..143422118-chr6:143422606..143425677,3	MCF-7	breast:
3	chr6:143424126..143427059-chr6:143431274..143435341,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PEX3-6	chr6:143424052-143424354	expReg_chr6_10507_+

Variant related genes	Relation type
ENSG00000225752	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10452656	0.84[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2092238	1.00[EUR][1000 genomes]
rs2876548	1.00[EUR][1000 genomes]
rs56887572	1.00[EUR][1000 genomes]
rs58798749	1.00[EUR][1000 genomes]
rs60445283	1.00[EUR][1000 genomes]
rs61171267	1.00[EUR][1000 genomes]
rs6570546	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906865	1.00[EUR][1000 genomes]
rs6907970	1.00[EUR][1000 genomes]
rs6914766	1.00[EUR][1000 genomes]
rs6925127	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6932133	1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6937052	1.00[EUR][1000 genomes]
rs73777869	1.00[EUR][1000 genomes]
rs73777870	1.00[EUR][1000 genomes]
rs73777871	1.00[EUR][1000 genomes]
rs7748623	1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143386400-143431800	Weak transcription	NHEK	skin
3	chr6:143389600-143437000	Weak transcription	HSMM	muscle
4	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143397400-143431600	Weak transcription	HMEC	breast
6	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
7	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
8	chr6:143417800-143427600	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr6:143419000-143426000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143419000-143427000	Weak transcription	Spleen	Spleen
12	chr6:143419200-143425800	Weak transcription	Fetal Intestine Small	intestine
13	chr6:143419200-143427800	Weak transcription	Small Intestine	intestine
14	chr6:143419400-143427400	Weak transcription	K562	blood
15	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
16	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:143421400-143427400	Weak transcription	Liver	Liver
18	chr6:143421400-143428600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:143421800-143424800	Weak transcription	Brain Angular Gyrus	brain
20	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:143424000-143427600	Weak transcription	HepG2	liver

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