Variant report

Variant	rs10452656
Chromosome Location	chr6:143436003-143436004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143427899..143429487-chr6:143435629..143437861,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10434868	1.00[MEX][hapmap];0.90[YRI][hapmap]
rs17072213	0.84[ASW][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17072228	0.86[YRI][hapmap]
rs2092238	0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876548	0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56887572	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58798749	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60445283	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61171267	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570546	1.00[EUR][1000 genomes]
rs6570548	0.90[YRI][hapmap]
rs6906865	0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6907970	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6914766	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919707	1.00[MEX][hapmap];0.90[YRI][hapmap]
rs6925127	1.00[EUR][1000 genomes]
rs6932133	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6937052	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777869	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777870	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777871	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7748623	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7775541	1.00[MEX][hapmap];0.90[YRI][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143389600-143437000	Weak transcription	HSMM	muscle
2	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
3	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
4	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
8	chr6:143428000-143437800	Weak transcription	K562	blood
9	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
11	chr6:143432000-143436800	Weak transcription	Fetal Brain Male	brain
12	chr6:143432000-143440600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:143432000-143452000	Weak transcription	Ovary	ovary
14	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:143433200-143441600	Weak transcription	NHEK	skin
19	chr6:143433400-143446400	Weak transcription	NH-A	brain
20	chr6:143433400-143447600	Weak transcription	HMEC	breast
21	chr6:143434000-143436600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:143434400-143436800	Weak transcription	Fetal Heart	heart
23	chr6:143435000-143436800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:143435000-143437600	Weak transcription	HepG2	liver
25	chr6:143435000-143438400	Enhancers	Fetal Intestine Large	intestine
26	chr6:143435200-143436200	Enhancers	Liver	Liver
27	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:143435400-143440600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:143435600-143437800	Enhancers	Fetal Intestine Small	intestine
30	chr6:143436000-143440000	Weak transcription	Adipose Nuclei	Adipose

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