Variant report

Variant	rs6935786
Chromosome Location	chr6:143443095-143443096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143437209..143439672-chr6:143441874..143443715,2	K562	blood:
2	chr6:143441849..143444705-chr6:143484533..143487191,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10434867	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434889	0.88[ASN][1000 genomes]
rs11155280	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12055784	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072228	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17628867	0.82[ASN][1000 genomes]
rs17628922	1.00[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap]
rs2092237	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56139045	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56299540	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56860246	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60976225	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6570548	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6906306	1.00[EUR][1000 genomes]
rs6906865	0.83[AMR][1000 genomes]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs73777873	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73777888	0.96[ASN][1000 genomes]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9373372	0.85[AMR][1000 genomes]
rs9373374	0.96[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376721	0.83[ASN][1000 genomes]
rs9376722	0.83[ASN][1000 genomes]
rs9376723	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9386024	0.96[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9390055	0.82[ASN][1000 genomes]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390060	0.96[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap]
rs9399420	0.82[ASN][1000 genomes]
rs9399421	1.00[ASN][1000 genomes]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9399424	0.96[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403440	0.83[ASN][1000 genomes]
rs9403441	0.83[ASN][1000 genomes]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403445	1.00[ASN][1000 genomes]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403449	0.96[ASN][1000 genomes]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9484706	0.96[ASN][1000 genomes]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
6	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143432000-143452000	Weak transcription	Ovary	ovary
8	chr6:143432800-143444000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:143433400-143446400	Weak transcription	NH-A	brain
13	chr6:143433400-143447600	Weak transcription	HMEC	breast
14	chr6:143435200-143444000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:143439200-143445400	Weak transcription	K562	blood
17	chr6:143440800-143445400	Weak transcription	Gastric	stomach
18	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
19	chr6:143441000-143445400	Weak transcription	Liver	Liver
20	chr6:143441000-143451800	Weak transcription	HepG2	liver
21	chr6:143441200-143479000	Weak transcription	NHLF	lung
22	chr6:143441400-143444000	Weak transcription	Fetal Intestine Large	intestine
23	chr6:143442200-143446600	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:143442400-143444200	Weak transcription	Fetal Brain Male	brain
25	chr6:143442600-143450000	Weak transcription	Fetal Intestine Small	intestine
26	chr6:143442600-143450400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:143442600-143451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr6:143442600-143451600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:143442800-143450600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:143442800-143450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr6:143442800-143452000	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:143442800-143452000	Weak transcription	NHEK	skin
33	chr6:143443000-143443800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:143443000-143451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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