Variant report

Variant	rs9390055
Chromosome Location	chr6:143430003-143430004
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143416987..143419497-chr6:143429093..143431319,2	K562	blood:
2	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
3	chr6:143427658..143429205-chr6:143429349..143432332,2	MCF-7	breast:

rs_ID	r²[population]
rs10434867	0.82[ASN][1000 genomes]
rs10434868	0.82[ASN][1000 genomes]
rs11155280	0.82[ASN][1000 genomes]
rs17628867	1.00[ASN][1000 genomes]
rs17628922	0.82[ASN][1000 genomes]
rs17629043	0.86[ASN][1000 genomes]
rs6919707	0.82[ASN][1000 genomes]
rs6935786	0.82[ASN][1000 genomes]
rs73777873	0.82[ASN][1000 genomes]
rs73777876	0.82[ASN][1000 genomes]
rs7775541	0.82[ASN][1000 genomes]
rs9376723	0.82[ASN][1000 genomes]
rs9390056	0.82[ASN][1000 genomes]
rs9399420	1.00[ASN][1000 genomes]
rs9399421	0.82[ASN][1000 genomes]
rs9403444	0.82[ASN][1000 genomes]
rs9403445	0.82[ASN][1000 genomes]
rs9403451	0.86[ASN][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143386400-143431800	Weak transcription	NHEK	skin
2	chr6:143389600-143437000	Weak transcription	HSMM	muscle
3	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143397400-143431600	Weak transcription	HMEC	breast
5	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
6	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
7	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:143426400-143431800	Weak transcription	NH-A	brain
14	chr6:143427200-143431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:143427400-143430200	Enhancers	Adipose Nuclei	Adipose
16	chr6:143427400-143431200	Enhancers	Liver	Liver
17	chr6:143427600-143431200	Weak transcription	Ovary	ovary
18	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
19	chr6:143428000-143437800	Weak transcription	K562	blood
20	chr6:143428200-143430200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:143428600-143430200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:143429200-143430200	Enhancers	HSMMtube	muscle
24	chr6:143429200-143431600	Weak transcription	Fetal Brain Male	brain
25	chr6:143429200-143433400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:143429400-143430400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:143429400-143430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine
29	chr6:143429600-143434000	Weak transcription	Fetal Intestine Large	intestine
30	chr6:143429800-143431000	Weak transcription	HepG2	liver
31	chr6:143429800-143431400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:143430000-143431200	Weak transcription	Osteobl	bone
33	chr6:143430000-143431400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:143430000-143432800	Weak transcription	Fetal Lung	lung

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