Variant report

Variant	rs11155280
Chromosome Location	chr6:143431467-143431468
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143424126..143427059-chr6:143431274..143435341,4	K562	blood:
2	chr6:143421246..143425129-chr6:143429361..143431906,3	K562	blood:
3	chr6:143427658..143429205-chr6:143429349..143432332,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10434867	1.00[ASN][1000 genomes]
rs10434868	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10434889	0.88[ASN][1000 genomes]
rs12055784	1.00[JPT][hapmap]
rs1413625	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17072255	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17072283	1.00[CHB][hapmap]
rs17072288	1.00[CHB][hapmap]
rs17590908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17628867	0.82[ASN][1000 genomes]
rs17628922	1.00[ASN][1000 genomes]
rs17629061	1.00[CHB][hapmap]
rs6919707	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6927915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6935786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6936376	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs73777873	1.00[ASN][1000 genomes]
rs73777876	1.00[ASN][1000 genomes]
rs73777888	0.96[ASN][1000 genomes]
rs7775541	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9321893	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9373374	0.96[ASN][1000 genomes]
rs9373375	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376721	0.83[ASN][1000 genomes]
rs9376722	0.83[ASN][1000 genomes]
rs9376723	1.00[ASN][1000 genomes]
rs9376724	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9376728	1.00[CHB][hapmap]
rs9386018	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386020	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9386023	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9386024	0.96[ASN][1000 genomes]
rs9390051	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9390052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9390055	0.82[ASN][1000 genomes]
rs9390056	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9390057	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390058	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390059	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9390060	0.96[ASN][1000 genomes]
rs9390062	1.00[CHB][hapmap]
rs9399420	0.82[ASN][1000 genomes]
rs9399421	1.00[ASN][1000 genomes]
rs9399422	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9399424	0.96[ASN][1000 genomes]
rs9403439	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403440	0.83[ASN][1000 genomes]
rs9403441	0.83[ASN][1000 genomes]
rs9403442	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9403444	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9403445	1.00[ASN][1000 genomes]
rs9403446	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs9403449	0.96[ASN][1000 genomes]
rs9403453	1.00[CHB][hapmap]
rs9403454	1.00[CHB][hapmap]
rs9403457	1.00[CHB][hapmap]
rs9484706	0.96[ASN][1000 genomes]
rs9496530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143386400-143431800	Weak transcription	NHEK	skin
2	chr6:143389600-143437000	Weak transcription	HSMM	muscle
3	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:143397400-143431600	Weak transcription	HMEC	breast
5	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
6	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
7	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:143419800-143431600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:143419800-143432000	Weak transcription	Duodenum Mucosa	Duodenum
10	chr6:143422800-143441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:143425000-143432600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
13	chr6:143426400-143431800	Weak transcription	NH-A	brain
14	chr6:143427200-143431600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
16	chr6:143428000-143437800	Weak transcription	K562	blood
17	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr6:143429200-143431600	Weak transcription	Fetal Brain Male	brain
19	chr6:143429200-143433400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:143429400-143435600	Weak transcription	Fetal Intestine Small	intestine
21	chr6:143429600-143434000	Weak transcription	Fetal Intestine Large	intestine
22	chr6:143430000-143432800	Weak transcription	Fetal Lung	lung
23	chr6:143430200-143431600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:143430200-143435600	Weak transcription	Adipose Nuclei	Adipose
25	chr6:143430200-143442200	Weak transcription	HSMMtube	muscle
26	chr6:143430400-143431600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:143430600-143431600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:143431200-143431600	Enhancers	Osteobl	bone
29	chr6:143431200-143433200	Weak transcription	Liver	Liver
30	chr6:143431400-143431800	Weak transcription	Ovary	ovary
31	chr6:143431400-143432800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr6:143431400-143433000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr6:143431400-143433000	Enhancers	NHDF-Ad	bronchial
34	chr6:143431400-143433400	Weak transcription	HepG2	liver
35	chr6:143431400-143433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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