The 2.0 version of rSNPBase

Variant report

Variant rs9399424
Chromosome Location chr6:143459886-143459887
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143441200-143479000 Weak transcription NHLF lung
2 chr6:143443600-143462200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr6:143445800-143479200 Weak transcription Lung lung
6 chr6:143448400-143487400 Weak transcription Rectal Mucosa Donor 29 rectum
7 chr6:143451000-143460400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr6:143452000-143497000 Weak transcription Fetal Stomach stomach
9 chr6:143452200-143477800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr6:143452800-143461400 Weak transcription Fetal Heart heart
11 chr6:143452800-143461800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr6:143452800-143463800 Weak transcription H1 Cell Line embryonic stem cell
13 chr6:143453000-143460600 Weak transcription Brain Cingulate Gyrus brain
14 chr6:143453000-143461800 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr6:143453000-143462000 Weak transcription Brain Angular Gyrus brain
16 chr6:143453000-143462000 Weak transcription Colon Smooth Muscle Colon
17 chr6:143453000-143464400 Weak transcription HSMM muscle
18 chr6:143453000-143465400 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr6:143453000-143474200 Weak transcription ES-I3 Cell Line embryonic stem cell
20 chr6:143453000-143481600 Weak transcription Right Ventricle heart
21 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
22 chr6:143453000-143508600 Weak transcription Fetal Lung lung
23 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
24 chr6:143453200-143460800 Weak transcription Fetal Kidney kidney
25 chr6:143453200-143470800 Weak transcription Primary neutrophils fromperipheralblood blood
26 chr6:143454200-143464000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr6:143455600-143460000 Weak transcription Brain Hippocampus Middle brain
28 chr6:143456200-143461600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
29 chr6:143456200-143463600 Weak transcription Psoas Muscle Psoas
30 chr6:143456400-143462600 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr6:143456600-143460400 Weak transcription Brain Anterior Caudate brain
32 chr6:143457000-143465400 Weak transcription HSMMtube muscle
33 chr6:143457200-143460200 Weak transcription Primary B cells from peripheral blood blood
34 chr6:143457200-143460400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:143457200-143460800 Weak transcription Muscle Satellite Cultured Cells --
36 chr6:143457200-143470800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr6:143457800-143460000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr6:143457800-143460400 Weak transcription NHDF-Ad bronchial
39 chr6:143457800-143463800 Strong transcription Liver Liver
40 chr6:143458000-143460400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr6:143458000-143460600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr6:143458200-143462200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr6:143458200-143486600 Weak transcription Aorta Aorta
44 chr6:143458400-143460400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr6:143458400-143460800 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr6:143458400-143463400 Weak transcription Brain Substantia Nigra brain
47 chr6:143458400-143463600 Weak transcription Primary T cells fromperipheralblood blood
48 chr6:143458600-143462600 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr6:143458600-143464000 Weak transcription Fetal Muscle Leg muscle
50 chr6:143458600-143468000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015