Variant report

Variant	rs9390044
Chromosome Location	chr6:143355473-143355474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12055784	0.85[ASN][1000 genomes]
rs1413625	0.81[ASN][1000 genomes]
rs56299540	0.85[ASN][1000 genomes]
rs60976225	0.85[ASN][1000 genomes]
rs9373371	1.00[ASN][1000 genomes]
rs9373372	0.85[ASN][1000 genomes]
rs9373373	0.85[ASN][1000 genomes]
rs9376720	1.00[ASN][1000 genomes]
rs9386017	1.00[ASN][1000 genomes]
rs9386018	0.90[ASN][1000 genomes]
rs9386020	0.85[ASN][1000 genomes]
rs9386022	0.85[ASN][1000 genomes]
rs9390041	0.90[ASN][1000 genomes]
rs9390042	0.90[ASN][1000 genomes]
rs9390045	1.00[ASN][1000 genomes]
rs9390048	1.00[ASN][1000 genomes]
rs9390049	1.00[ASN][1000 genomes]
rs9390050	0.85[ASN][1000 genomes]
rs9390051	0.85[ASN][1000 genomes]
rs9403427	0.90[ASN][1000 genomes]
rs9403428	0.90[ASN][1000 genomes]
rs9403436	0.85[ASN][1000 genomes]
rs9403437	0.85[ASN][1000 genomes]
rs9403438	0.85[ASN][1000 genomes]
rs9403439	0.85[ASN][1000 genomes]
rs9403442	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143338800-143356400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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