Variant report

Variant	rs9390041
Chromosome Location	chr6:143347089-143347090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs55640326	1.00[AFR][1000 genomes]
rs56201859	1.00[AFR][1000 genomes]
rs56381249	1.00[AFR][1000 genomes]
rs57453240	0.90[AFR][1000 genomes]
rs57511897	1.00[AFR][1000 genomes]
rs58776492	1.00[AFR][1000 genomes]
rs73777848	1.00[AFR][1000 genomes]
rs73777855	1.00[AFR][1000 genomes]
rs73777859	1.00[AFR][1000 genomes]
rs9373371	0.90[ASN][1000 genomes]
rs9376720	0.90[ASN][1000 genomes]
rs9386017	0.90[ASN][1000 genomes]
rs9390042	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9390044	0.90[ASN][1000 genomes]
rs9390045	0.90[ASN][1000 genomes]
rs9390048	0.90[ASN][1000 genomes]
rs9390049	0.90[ASN][1000 genomes]
rs9403427	1.00[ASN][1000 genomes]
rs9403428	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143338800-143356400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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