Variant report

Variant	rs9496531
Chromosome Location	chr6:143467417-143467418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143465917..143468152-chr6:143484946..143487338,2	K562	blood:
2	chr6:143465482..143468475-chr6:143474212..143476748,3	K562	blood:
3	chr6:143461131..143463403-chr6:143465550..143468868,3	K562	blood:
4	chr6:143466389..143468475-chr6:143475248..143476894,2	K562	blood:
5	chr6:143461131..143463403-chr6:143465928..143468868,2	K562	blood:
6	chr6:143467405..143470076-chr6:143484423..143487340,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17072255	0.88[YRI][hapmap]
rs58657197	1.00[EUR][1000 genomes]
rs6905322	0.87[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927915	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6936376	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777888	1.00[EUR][1000 genomes]
rs9373375	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9390057	1.00[YRI][hapmap]
rs9390059	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9484706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9496527	1.00[YRI][hapmap]
rs9496530	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143441200-143479000	Weak transcription	NHLF	lung
2	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:143444600-143516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143445800-143479200	Weak transcription	Lung	lung
5	chr6:143448400-143487400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:143452000-143497000	Weak transcription	Fetal Stomach	stomach
7	chr6:143452200-143477800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:143453000-143474200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143453000-143481600	Weak transcription	Right Ventricle	heart
10	chr6:143453000-143497200	Weak transcription	Pancreas	Pancrea
11	chr6:143453000-143508600	Weak transcription	Fetal Lung	lung
12	chr6:143453000-143510600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:143453200-143470800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:143457200-143470800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:143458200-143486600	Weak transcription	Aorta	Aorta
16	chr6:143458600-143468000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:143458600-143479200	Weak transcription	Gastric	stomach
18	chr6:143458800-143477800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
20	chr6:143459200-143477800	Weak transcription	Left Ventricle	heart
21	chr6:143459200-143477800	Weak transcription	NHEK	skin
22	chr6:143459200-143479000	Weak transcription	Ovary	ovary
23	chr6:143459200-143479200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:143459200-143484200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:143459400-143468200	Weak transcription	HepG2	liver
26	chr6:143459400-143479200	Weak transcription	Adipose Nuclei	Adipose
27	chr6:143459600-143484000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:143459600-143486600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr6:143459600-143505400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:143459800-143477800	Weak transcription	HMEC	breast
31	chr6:143461000-143487400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:143462200-143467800	Weak transcription	K562	blood
33	chr6:143462200-143468400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:143462200-143470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:143462200-143497800	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr6:143462600-143468000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:143462600-143468400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:143462600-143477800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:143462800-143479200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:143463000-143508400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:143463600-143468400	Weak transcription	Fetal Intestine Large	intestine
42	chr6:143463800-143467600	Weak transcription	Liver	Liver
43	chr6:143463800-143476400	Weak transcription	Psoas Muscle	Psoas
44	chr6:143465800-143483600	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr6:143466800-143479200	Weak transcription	Esophagus	oesophagus
46	chr6:143467000-143467800	Enhancers	Osteobl	bone
47	chr6:143467200-143467600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:143467200-143468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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