Variant report

Variant	rs58289411
Chromosome Location	chr6:143576166-143576167
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17072423	1.00[EUR][1000 genomes]
rs55784672	1.00[EUR][1000 genomes]
rs57521514	1.00[EUR][1000 genomes]
rs57840309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58636117	1.00[EUR][1000 genomes]
rs59145715	1.00[EUR][1000 genomes]
rs59873606	1.00[EUR][1000 genomes]
rs60284513	1.00[EUR][1000 genomes]
rs61094753	1.00[EUR][1000 genomes]
rs61523637	1.00[EUR][1000 genomes]
rs6935548	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73777866	1.00[EUR][1000 genomes]
rs73781130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9373385	1.00[EUR][1000 genomes]
rs9376736	1.00[EUR][1000 genomes]
rs9376738	1.00[EUR][1000 genomes]
rs9484729	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981344	chr6:143566840-143579617	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143546000-143576200	Weak transcription	HepG2	liver
4	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
5	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
9	chr6:143565200-143579400	Weak transcription	Ovary	ovary
10	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus
11	chr6:143568000-143578000	Weak transcription	K562	blood
12	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
15	chr6:143570000-143581600	Weak transcription	NHEK	skin
16	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
17	chr6:143571000-143579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143571400-143581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:143573800-143576200	Enhancers	Fetal Stomach	stomach
20	chr6:143574200-143577200	Weak transcription	Left Ventricle	heart
21	chr6:143574400-143583000	Weak transcription	Liver	Liver
22	chr6:143575200-143576200	Enhancers	Fetal Lung	lung
23	chr6:143575400-143576200	Enhancers	Lung	lung
24	chr6:143576000-143579400	Weak transcription	Fetal Intestine Small	intestine

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