Variant report

Variant	rs73777866
Chromosome Location	chr6:143383032-143383033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143382100..143384981-chr6:143387320..143388828,2	K562	blood:
2	chr6:143381342..143383522-chr6:143831139..143832827,2	K562	blood:
3	chr6:143379898..143383638-chr6:143483833..143489108,8	K562	blood:
4	chr6:143382426..143384220-chr6:143518377..143519949,2	K562	blood:
5	chr6:143380360..143383135-chr6:143419017..143422482,3	K562	blood:
6	chr6:143381113..143383323-chr6:143484337..143488491,4	K562	blood:

Variant related genes	Relation type
ENSG00000001036	Chromatin interaction
ENSG00000146416	Chromatin interaction
ENSG00000225752	Chromatin interaction

rs_ID	r²[population]
rs55936628	1.00[AMR][1000 genomes]
rs56249423	1.00[AMR][1000 genomes]
rs57840309	1.00[EUR][1000 genomes]
rs58289411	1.00[EUR][1000 genomes]
rs59269430	1.00[AMR][1000 genomes]
rs6935548	1.00[EUR][1000 genomes]
rs73777856	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777858	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777860	1.00[AMR][1000 genomes]
rs73777861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777880	1.00[AMR][1000 genomes]
rs73777886	1.00[AMR][1000 genomes]
rs73777895	1.00[AMR][1000 genomes]
rs73777902	1.00[AMR][1000 genomes]
rs73781103	1.00[AMR][1000 genomes]
rs73781109	1.00[AMR][1000 genomes]
rs73781111	1.00[AMR][1000 genomes]
rs73781115	1.00[AMR][1000 genomes]
rs73781130	1.00[EUR][1000 genomes]

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143380600-143383200	Active TSS	Liver	Liver
2	chr6:143381200-143383600	Active TSS	H1 Cell Line	embryonic stem cell
3	chr6:143382200-143383200	Flanking Active TSS	GM12878-XiMat	blood
4	chr6:143382200-143383400	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr6:143382200-143383600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:143382400-143383200	Weak transcription	Small Intestine	intestine
7	chr6:143382400-143383200	Flanking Active TSS	NHEK	skin
8	chr6:143382400-143383600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr6:143382400-143383600	Flanking Active TSS	HMEC	breast
10	chr6:143382600-143383200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:143382600-143383200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:143382600-143383200	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:143382600-143383200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:143382600-143383200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:143382600-143383400	Flanking Active TSS	Fetal Intestine Small	intestine
16	chr6:143382600-143383600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:143382600-143383600	Weak transcription	Psoas Muscle	Psoas
18	chr6:143382600-143383800	Flanking Active TSS	HepG2	liver
19	chr6:143382600-143384000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:143382600-143385400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:143382600-143386200	Weak transcription	Pancreas	Pancrea
22	chr6:143382600-143389200	Weak transcription	Aorta	Aorta
23	chr6:143382600-143426800	Weak transcription	Ovary	ovary
24	chr6:143382800-143383200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr6:143382800-143383200	Enhancers	Primary B cells from cord blood	blood
26	chr6:143382800-143383200	Enhancers	Primary T cells from cord blood	blood
27	chr6:143382800-143383200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:143382800-143383200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr6:143382800-143383200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr6:143382800-143383200	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:143382800-143383200	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:143382800-143383200	Enhancers	Colon Smooth Muscle	Colon
33	chr6:143382800-143383200	Weak transcription	Esophagus	oesophagus
34	chr6:143382800-143383200	Flanking Active TSS	Fetal Intestine Large	intestine
35	chr6:143382800-143383200	Enhancers	Rectal Mucosa Donor 31	rectum
36	chr6:143382800-143383400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:143382800-143383400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:143382800-143383400	Enhancers	Right Ventricle	heart
39	chr6:143382800-143383600	Weak transcription	Right Atrium	heart
40	chr6:143382800-143383800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
41	chr6:143382800-143383800	Enhancers	Brain Substantia Nigra	brain
42	chr6:143382800-143383800	Weak transcription	Spleen	Spleen
43	chr6:143382800-143384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:143382800-143384200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr6:143382800-143384200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:143382800-143384200	Enhancers	Adipose Nuclei	Adipose
47	chr6:143382800-143384200	Enhancers	Fetal Heart	heart
48	chr6:143382800-143384400	Flanking Active TSS	K562	blood
49	chr6:143382800-143384600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr6:143382800-143384800	Enhancers	Skeletal Muscle Male	skeletal muscle

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