Variant report

Variant	rs73777856
Chromosome Location	chr6:143358896-143358897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55936628	1.00[AMR][1000 genomes]
rs56249423	1.00[AMR][1000 genomes]
rs59269430	1.00[AMR][1000 genomes]
rs73777858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777860	1.00[AMR][1000 genomes]
rs73777861	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777880	1.00[AMR][1000 genomes]
rs73777886	1.00[AMR][1000 genomes]
rs73777895	1.00[AMR][1000 genomes]
rs73777902	1.00[AMR][1000 genomes]
rs73781103	1.00[AMR][1000 genomes]
rs73781109	1.00[AMR][1000 genomes]
rs73781111	1.00[AMR][1000 genomes]
rs73781115	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538459	chr6:143165802-143360098	Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143356800-143360000	Weak transcription	GM12878-XiMat	blood
2	chr6:143356800-143377000	Weak transcription	HepG2	liver
3	chr6:143358000-143359200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:143358200-143359000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:143358200-143359000	Enhancers	K562	blood
6	chr6:143358200-143359600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:143358600-143359200	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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