The 2.0 version of rSNPBase

Variant report

Variant rs55936628
Chromosome Location chr6:143478046-143478047
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143441200-143479000 Weak transcription NHLF lung
2 chr6:143443800-143498800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr6:143444600-143516400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr6:143445800-143479200 Weak transcription Lung lung
5 chr6:143448400-143487400 Weak transcription Rectal Mucosa Donor 29 rectum
6 chr6:143452000-143497000 Weak transcription Fetal Stomach stomach
7 chr6:143453000-143481600 Weak transcription Right Ventricle heart
8 chr6:143453000-143497200 Weak transcription Pancreas Pancrea
9 chr6:143453000-143508600 Weak transcription Fetal Lung lung
10 chr6:143453000-143510600 Weak transcription Brain Inferior Temporal Lobe brain
11 chr6:143458200-143486600 Weak transcription Aorta Aorta
12 chr6:143458600-143479200 Weak transcription Gastric stomach
13 chr6:143458800-143529200 Weak transcription Primary T cells from cord blood blood
14 chr6:143459200-143479000 Weak transcription Ovary ovary
15 chr6:143459200-143479200 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr6:143459200-143484200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr6:143459400-143479200 Weak transcription Adipose Nuclei Adipose
18 chr6:143459600-143484000 Weak transcription HUES64 Cell Line embryonic stem cell
19 chr6:143459600-143486600 Weak transcription Duodenum Mucosa Duodenum
20 chr6:143459600-143505400 Weak transcription HUES48 Cell Line embryonic stem cell
21 chr6:143461000-143487400 Weak transcription Brain Cingulate Gyrus brain
22 chr6:143462200-143497800 Weak transcription Cortex derived primary cultured neurospheres brain
23 chr6:143462800-143479200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr6:143463000-143508400 Weak transcription Stomach Smooth Muscle stomach
25 chr6:143465800-143483600 Weak transcription H9 Cell Line embryonic stem cell
26 chr6:143466800-143479200 Weak transcription Esophagus oesophagus
27 chr6:143468400-143479000 Weak transcription K562 blood
28 chr6:143468400-143484600 Weak transcription Primary hematopoietic stem cells blood
29 chr6:143469800-143483600 Weak transcription Fetal Intestine Large intestine
30 chr6:143470200-143485800 Weak transcription HepG2 liver
31 chr6:143471800-143478400 Weak transcription Osteobl bone
32 chr6:143471800-143486600 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr6:143474600-143479800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr6:143476400-143482000 Enhancers Psoas Muscle Psoas
35 chr6:143476800-143479000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr6:143477000-143478200 Enhancers Skeletal Muscle Female skeletal muscle
37 chr6:143477000-143482200 Enhancers Skeletal Muscle Male skeletal muscle
38 chr6:143477000-143501200 Weak transcription Right Atrium heart
39 chr6:143477800-143478200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
40 chr6:143477800-143478200 Strong transcription Fetal Intestine Small intestine
41 chr6:143477800-143478200 Enhancers Left Ventricle heart
42 chr6:143477800-143478600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr6:143477800-143480200 Enhancers Liver Liver
44 chr6:143477800-143481600 Enhancers NHEK skin
45 chr6:143477800-143481800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
46 chr6:143477800-143481800 Enhancers HMEC breast
47 chr6:143477800-143482200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
48 chr6:143478000-143480400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015