Variant report

Variant	rs9496569
Chromosome Location	chr6:143620828-143620829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:29)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:29 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr6:143620537-143621117	GM12878	blood:	n/a	n/a
2	RUNX3	chr6:143620333-143621055	GM12878	blood:	n/a	n/a
3	CTCF	chr6:143620820-143620970	GM12872	blood:	n/a	n/a
4	CTCF	chr6:143620800-143620950	RPTEC	kidney:	n/a	n/a
5	CTCF	chr6:143620800-143620950	HBMEC	blood vessel:	n/a	n/a
6	CTCF	chr6:143620800-143620950	GM12872	blood:	n/a	n/a
7	CTCF	chr6:143620825-143620972	MCF-7	breast:	n/a	n/a
8	BATF	chr6:143620566-143620882	GM12878	blood:	n/a	n/a
9	SRF	chr6:143620616-143620890	GM12878	blood:	n/a	n/a
10	CTCF	chr6:143620760-143620910	GM12872	blood:	n/a	n/a
11	NFIC	chr6:143620454-143621011	GM12878	blood:	n/a	n/a
12	CTCF	chr6:143620760-143620910	HAc	cerebellar:	n/a	n/a
13	CTCF	chr6:143620780-143620930	MCF-7	breast:	n/a	n/a
14	NFIC	chr6:143620451-143621092	GM12878	blood:	n/a	n/a
15	CTCF	chr6:143620800-143620950	GM12870	blood:	n/a	n/a
16	CTCF	chr6:143620820-143620970	A549	lung:	n/a	n/a
17	ATF2	chr6:143620495-143620952	GM12878	blood:	n/a	n/a
18	CTCF	chr6:143620740-143620890	HEK293	kidney:	n/a	n/a
19	RUNX3	chr6:143620419-143621021	GM12878	blood:	n/a	n/a
20	ATF2	chr6:143620502-143621037	GM12878	blood:	n/a	n/a
21	RAD21	chr6:143620702-143621007	GM12878	blood:	n/a	n/a
22	CTCF	chr6:143620800-143620950	GM12873	blood:	n/a	n/a
23	CTCF	chr6:143620820-143620970	GM06990	blood:	n/a	n/a
24	CTCF	chr6:143620820-143620970	HepG2	liver:	n/a	n/a
25	CTCF	chr6:143620800-143620950	HCT-116	colon:	n/a	n/a
26	CTCF	chr6:143620800-143620950	GM12878	blood:	n/a	n/a
27	RCOR1	chr6:143620730-143620898	GM12878	blood:	n/a	n/a
28	CTCF	chr6:143620800-143620950	MCF-7	breast:	n/a	n/a
29	BATF	chr6:143620501-143621034	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000217495	TF binding region

rs_ID	r²[population]
rs10080605	1.00[AMR][1000 genomes]
rs12332915	1.00[AMR][1000 genomes]
rs13191959	1.00[AMR][1000 genomes]
rs55936628	1.00[AMR][1000 genomes]
rs56249423	1.00[AMR][1000 genomes]
rs57103750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59269430	1.00[AMR][1000 genomes]
rs59881018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777880	1.00[AMR][1000 genomes]
rs73777886	1.00[AMR][1000 genomes]
rs73777895	1.00[AMR][1000 genomes]
rs73777902	1.00[AMR][1000 genomes]
rs73781103	1.00[AMR][1000 genomes]
rs73781109	1.00[AMR][1000 genomes]
rs73781111	1.00[AMR][1000 genomes]
rs73781115	1.00[AMR][1000 genomes]
rs9484725	1.00[AMR][1000 genomes]
rs9496553	1.00[AMR][1000 genomes]
rs9496554	1.00[AMR][1000 genomes]
rs9496555	1.00[AMR][1000 genomes]
rs9496566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496568	1.00[AMR][1000 genomes]
rs9496570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496584	1.00[AMR][1000 genomes]
rs9496585	1.00[AMR][1000 genomes]

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143605600-143622000	Weak transcription	HepG2	liver
3	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
5	chr6:143608800-143624200	Weak transcription	Ovary	ovary
6	chr6:143608800-143629400	Weak transcription	NHEK	skin
7	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143615400-143643400	Weak transcription	HSMM	muscle
12	chr6:143616800-143624400	Weak transcription	K562	blood
13	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
14	chr6:143619200-143621400	Enhancers	Fetal Heart	heart
15	chr6:143619600-143623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:143620400-143621200	Flanking Active TSS	GM12878-XiMat	blood
17	chr6:143620600-143629600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143620800-143621200	Genic enhancers	Left Ventricle	heart
19	chr6:143620800-143622400	Weak transcription	Liver	Liver

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