The 2.0 version of rSNPBase

Variant report

Variant rs13191959
Chromosome Location chr6:143656172-143656173
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143642600-143675600 Weak transcription Left Ventricle heart
2 chr6:143643800-143661200 Weak transcription Aorta Aorta
3 chr6:143645000-143683200 Weak transcription Pancreas Pancrea
4 chr6:143645200-143656800 Weak transcription Psoas Muscle Psoas
5 chr6:143646000-143664000 Weak transcription Primary neutrophils fromperipheralblood blood
6 chr6:143647200-143657400 Weak transcription NHLF lung
7 chr6:143647400-143658200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr6:143650800-143657200 Weak transcription NH-A brain
9 chr6:143650800-143657400 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr6:143650800-143657400 Weak transcription NHDF-Ad bronchial
11 chr6:143652400-143662200 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr6:143652800-143656400 Weak transcription Right Ventricle heart
13 chr6:143652800-143664000 Weak transcription Duodenum Mucosa Duodenum
14 chr6:143653000-143658200 Weak transcription Fetal Intestine Small intestine
15 chr6:143653000-143659000 Weak transcription K562 blood
16 chr6:143653000-143662200 Weak transcription Stomach Smooth Muscle stomach
17 chr6:143653000-143665600 Weak transcription Brain Cingulate Gyrus brain
18 chr6:143653400-143663800 Weak transcription Duodenum Smooth Muscle Duodenum
19 chr6:143653600-143658000 Weak transcription H9 Cell Line embryonic stem cell
20 chr6:143653800-143657800 Weak transcription HSMMtube muscle
21 chr6:143653800-143660600 Weak transcription Fetal Stomach stomach
22 chr6:143653800-143661000 Weak transcription Fetal Muscle Leg muscle
23 chr6:143653800-143663400 Weak transcription Fetal Lung lung
24 chr6:143654000-143656200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
25 chr6:143654000-143672000 Weak transcription Ovary ovary
26 chr6:143654200-143656200 Enhancers Cortex derived primary cultured neurospheres brain
27 chr6:143654200-143656200 Strong transcription HepG2 liver
28 chr6:143654200-143656600 Weak transcription Rectal Mucosa Donor 29 rectum
29 chr6:143654200-143657400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
30 chr6:143654200-143661600 Strong transcription Liver Liver
31 chr6:143654400-143657400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr6:143654400-143667800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr6:143654600-143656800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr6:143654600-143656800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr6:143654600-143657200 Weak transcription HSMM muscle
36 chr6:143654600-143657200 Weak transcription Osteobl bone
37 chr6:143654800-143656400 Flanking Active TSS NHEK skin
38 chr6:143654800-143657000 Weak transcription Muscle Satellite Cultured Cells --
39 chr6:143654800-143658000 Weak transcription HUES6 Cell Line embryonic stem cell
40 chr6:143654800-143663600 Weak transcription Fetal Kidney kidney
41 chr6:143655200-143656200 Genic enhancers HMEC breast
42 chr6:143655200-143665800 Weak transcription Fetal Intestine Large intestine
43 chr6:143655400-143664400 Weak transcription Fetal Muscle Trunk muscle
44 chr6:143655400-143666000 Weak transcription Brain Hippocampus Middle brain
45 chr6:143655600-143656200 Enhancers Fetal Brain Female brain
46 chr6:143655600-143658200 Weak transcription Esophagus oesophagus
47 chr6:143655600-143667200 Weak transcription Adipose Nuclei Adipose
48 chr6:143655800-143656200 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
49 chr6:143655800-143659200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr6:143656000-143656800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015