Variant report

Variant	rs9496568
Chromosome Location	chr6:143620176-143620177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143381231..143383097-chr6:143619109..143620649,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAT2-1	chr6:143619907-143620691	NONHSAT115341

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10080605	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12332915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13191959	1.00[AMR][1000 genomes]
rs1369235	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs55936628	1.00[AMR][1000 genomes]
rs56249423	1.00[AMR][1000 genomes]
rs57103750	1.00[AMR][1000 genomes]
rs59269430	1.00[AMR][1000 genomes]
rs59881018	1.00[AMR][1000 genomes]
rs73777880	1.00[AMR][1000 genomes]
rs73777886	1.00[AMR][1000 genomes]
rs73777895	1.00[AMR][1000 genomes]
rs73777902	1.00[AMR][1000 genomes]
rs73781103	1.00[AMR][1000 genomes]
rs73781109	1.00[AMR][1000 genomes]
rs73781111	1.00[AMR][1000 genomes]
rs73781115	1.00[AMR][1000 genomes]
rs9484725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496553	1.00[AMR][1000 genomes]
rs9496554	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496555	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496566	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9496569	1.00[AMR][1000 genomes]
rs9496570	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9496584	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143598600-143620200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:143603200-143622200	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:143605600-143622000	Weak transcription	HepG2	liver
4	chr6:143607600-143622200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143608400-143620800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:143608600-143620800	Weak transcription	Left Ventricle	heart
7	chr6:143608600-143624200	Weak transcription	Aorta	Aorta
8	chr6:143608800-143624200	Weak transcription	Ovary	ovary
9	chr6:143608800-143629400	Weak transcription	NHEK	skin
10	chr6:143609400-143622400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:143609800-143621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:143610000-143626000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:143613800-143624400	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143615400-143643400	Weak transcription	HSMM	muscle
15	chr6:143616800-143620200	Weak transcription	Liver	Liver
16	chr6:143616800-143624400	Weak transcription	K562	blood
17	chr6:143618600-143620600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:143618800-143634600	Weak transcription	Psoas Muscle	Psoas
19	chr6:143619200-143620200	Enhancers	Fetal Brain Female	brain
20	chr6:143619200-143621400	Enhancers	Fetal Heart	heart
21	chr6:143619600-143623600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:143619800-143620400	Enhancers	GM12878-XiMat	blood

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