Variant report

Variant	rs73777880
Chromosome Location	chr6:143444550-143444551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143441849..143444705-chr6:143484533..143487191,2	K562	blood:
2	chr6:143443205..143445427-chr6:143484533..143486072,2	K562	blood:

Variant related genes	Relation type
ENSG00000146416	Chromatin interaction

rs_ID	r²[population]
rs10080605	1.00[AMR][1000 genomes]
rs12332915	1.00[AMR][1000 genomes]
rs55936628	1.00[AMR][1000 genomes]
rs56249423	1.00[AMR][1000 genomes]
rs57103750	1.00[AMR][1000 genomes]
rs59269430	1.00[AMR][1000 genomes]
rs59881018	1.00[AMR][1000 genomes]
rs73777856	1.00[AMR][1000 genomes]
rs73777858	1.00[AMR][1000 genomes]
rs73777860	1.00[AMR][1000 genomes]
rs73777861	1.00[AMR][1000 genomes]
rs73777866	1.00[AMR][1000 genomes]
rs73777886	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777895	1.00[AMR][1000 genomes]
rs73777902	1.00[AMR][1000 genomes]
rs73781103	1.00[AMR][1000 genomes]
rs73781109	1.00[AMR][1000 genomes]
rs73781111	1.00[AMR][1000 genomes]
rs73781115	1.00[AMR][1000 genomes]
rs9484725	1.00[AMR][1000 genomes]
rs9496553	1.00[AMR][1000 genomes]
rs9496554	1.00[AMR][1000 genomes]
rs9496555	1.00[AMR][1000 genomes]
rs9496566	1.00[AMR][1000 genomes]
rs9496568	1.00[AMR][1000 genomes]
rs9496569	1.00[AMR][1000 genomes]
rs9496570	1.00[AMR][1000 genomes]
rs9496584	1.00[AMR][1000 genomes]
rs9496585	1.00[AMR][1000 genomes]

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143408600-143445400	Weak transcription	Aorta	Aorta
2	chr6:143408600-143452600	Weak transcription	Right Ventricle	heart
3	chr6:143417800-143445200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:143426200-143447400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:143427600-143451800	Weak transcription	Left Ventricle	heart
6	chr6:143428400-143452000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:143432000-143452000	Weak transcription	Ovary	ovary
8	chr6:143432800-143450800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:143433000-143445200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:143433000-143448400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:143433400-143446400	Weak transcription	NH-A	brain
12	chr6:143433400-143447600	Weak transcription	HMEC	breast
13	chr6:143437000-143452000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:143439200-143445400	Weak transcription	K562	blood
15	chr6:143440800-143445400	Weak transcription	Gastric	stomach
16	chr6:143440800-143452800	Weak transcription	Pancreas	Pancrea
17	chr6:143441000-143445400	Weak transcription	Liver	Liver
18	chr6:143441000-143451800	Weak transcription	HepG2	liver
19	chr6:143441200-143479000	Weak transcription	NHLF	lung
20	chr6:143442200-143446600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr6:143442600-143450000	Weak transcription	Fetal Intestine Small	intestine
22	chr6:143442600-143450400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr6:143442600-143451000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:143442600-143451600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:143442800-143450600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr6:143442800-143450800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:143442800-143452000	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:143442800-143452000	Weak transcription	NHEK	skin
29	chr6:143443000-143451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:143443200-143452000	Weak transcription	Primary T cells from cord blood	blood
31	chr6:143443600-143445400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:143443600-143462200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr6:143443800-143447800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:143443800-143450000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr6:143443800-143452600	Weak transcription	Brain Angular Gyrus	brain
36	chr6:143443800-143498800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:143444000-143444600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:143444000-143444800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:143444000-143446400	Enhancers	Osteobl	bone
40	chr6:143444000-143447600	Weak transcription	Spleen	Spleen
41	chr6:143444000-143449000	Strong transcription	Fetal Intestine Large	intestine
42	chr6:143444000-143449400	Weak transcription	Fetal Stomach	stomach
43	chr6:143444000-143449800	Enhancers	NHDF-Ad	bronchial
44	chr6:143444000-143451800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:143444200-143444600	Enhancers	Adipose Nuclei	Adipose
46	chr6:143444200-143444800	Enhancers	Fetal Brain Male	brain
47	chr6:143444200-143452000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:143444200-143452000	Weak transcription	Brain Inferior Temporal Lobe	brain

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