Variant report

Variant	rs13437539
Chromosome Location	chr6:143566259-143566260
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143550057..143552766-chr6:143564478..143566582,2	K562	blood:
2	chr6:143557083..143562017-chr6:143562858..143567253,5	K562	blood:
3	chr6:143565573..143568221-chr6:143568963..143571778,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080658	1.00[ASN][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs28846218	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[ASN][1000 genomes]
rs59572336	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594139	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73594165	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771499	0.83[AMR][1000 genomes]
rs9484726	1.00[ASN][1000 genomes]
rs9484727	1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496514	1.00[ASN][1000 genomes]
rs9496544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496547	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496548	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496563	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496580	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	1.00[ASN][1000 genomes]
rs9496586	1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13437539	AIG1	cis	multi-tissue	Pritchard

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143535000-143568000	Weak transcription	Aorta	Aorta
3	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:143546000-143576200	Weak transcription	HepG2	liver
5	chr6:143546200-143571200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:143550200-143570400	Weak transcription	Fetal Intestine Large	intestine
7	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
8	chr6:143557600-143574000	Weak transcription	Left Ventricle	heart
9	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:143557800-143567000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:143562600-143567800	Weak transcription	Osteobl	bone
12	chr6:143562600-143574200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:143563600-143569600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:143563800-143569600	Weak transcription	Liver	Liver
18	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
19	chr6:143565200-143566600	Weak transcription	K562	blood
20	chr6:143565200-143569400	Weak transcription	NHEK	skin
21	chr6:143565200-143573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:143565200-143579400	Weak transcription	Ovary	ovary
23	chr6:143565600-143568400	Weak transcription	Fetal Heart	heart
24	chr6:143565600-143570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus
26	chr6:143566200-143570200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:143566200-143574600	Weak transcription	Brain Inferior Temporal Lobe	brain

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