Variant report

Variant	rs73594139
Chromosome Location	chr6:143574013-143574014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080658	1.00[ASN][1000 genomes]
rs13437539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs28846218	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[ASN][1000 genomes]
rs59572336	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771499	0.83[AMR][1000 genomes]
rs9484726	1.00[ASN][1000 genomes]
rs9484727	1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496514	1.00[ASN][1000 genomes]
rs9496544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496547	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496548	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496563	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496580	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	1.00[ASN][1000 genomes]
rs9496586	1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981344	chr6:143566840-143579617	Strong transcription Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143527400-143578800	Weak transcription	Brain Hippocampus Middle	brain
2	chr6:143545400-143588800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:143546000-143576200	Weak transcription	HepG2	liver
4	chr6:143554200-143581400	Weak transcription	Psoas Muscle	Psoas
5	chr6:143557600-143575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143562600-143574200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:143562600-143579000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:143563400-143577200	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:143563400-143579800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:143564200-143583000	Weak transcription	Pancreas	Pancrea
11	chr6:143565200-143579400	Weak transcription	Ovary	ovary
12	chr6:143565600-143578200	Weak transcription	Esophagus	oesophagus
13	chr6:143566200-143574600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:143568000-143578000	Weak transcription	K562	blood
15	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:143569200-143586600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:143569600-143588600	Weak transcription	Aorta	Aorta
18	chr6:143570000-143581600	Weak transcription	NHEK	skin
19	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
20	chr6:143571000-143579800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:143571400-143575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:143571400-143575400	Weak transcription	Lung	lung
23	chr6:143571400-143581800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:143572800-143575800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:143573800-143576200	Enhancers	Fetal Stomach	stomach
26	chr6:143574000-143574200	Enhancers	Left Ventricle	heart
27	chr6:143574000-143574400	Strong transcription	Liver	Liver
28	chr6:143574000-143574600	Enhancers	Fetal Lung	lung
29	chr6:143574000-143574800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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