Variant report

Variant	rs9496604
Chromosome Location	chr6:143702113-143702114
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143701463..143703254-chr6:143713766..143715572,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080658	1.00[ASN][1000 genomes]
rs13437539	1.00[ASN][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	1.00[ASN][1000 genomes]
rs28537733	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4467794	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55790446	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56827403	1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[ASN][1000 genomes]
rs59572336	1.00[ASN][1000 genomes]
rs59940435	1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6570554	1.00[MEX][hapmap]
rs6935733	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs73594139	1.00[ASN][1000 genomes]
rs73594165	1.00[ASN][1000 genomes]
rs7771499	1.00[MEX][hapmap]
rs9484726	1.00[ASN][1000 genomes]
rs9484727	1.00[ASN][1000 genomes]
rs9484732	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484734	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484738	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496536	1.00[MEX][hapmap]
rs9496544	1.00[ASN][1000 genomes]
rs9496547	1.00[ASN][1000 genomes]
rs9496548	1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	1.00[ASN][1000 genomes]
rs9496563	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9496564	1.00[ASN][1000 genomes]
rs9496580	1.00[ASN][1000 genomes]
rs9496581	1.00[ASN][1000 genomes]
rs9496583	1.00[ASN][1000 genomes]
rs9496586	1.00[ASN][1000 genomes]
rs9496590	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496595	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496596	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496599	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9496604	NA	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143673000-143708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:143702000-143703600	Weak transcription	Aorta	Aorta

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