The 2.0 version of rSNPBase

Variant report

Variant rs55790446
Chromosome Location chr6:143661261-143661262
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:34 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143642600-143675600 Weak transcription Left Ventricle heart
2 chr6:143645000-143683200 Weak transcription Pancreas Pancrea
3 chr6:143646000-143664000 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr6:143652400-143662200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr6:143652800-143664000 Weak transcription Duodenum Mucosa Duodenum
6 chr6:143653000-143662200 Weak transcription Stomach Smooth Muscle stomach
7 chr6:143653000-143665600 Weak transcription Brain Cingulate Gyrus brain
8 chr6:143653400-143663800 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr6:143653800-143663400 Weak transcription Fetal Lung lung
10 chr6:143654000-143672000 Weak transcription Ovary ovary
11 chr6:143654200-143661600 Strong transcription Liver Liver
12 chr6:143654400-143667800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr6:143654800-143663600 Weak transcription Fetal Kidney kidney
14 chr6:143655200-143665800 Weak transcription Fetal Intestine Large intestine
15 chr6:143655400-143664400 Weak transcription Fetal Muscle Trunk muscle
16 chr6:143655400-143666000 Weak transcription Brain Hippocampus Middle brain
17 chr6:143655600-143667200 Weak transcription Adipose Nuclei Adipose
18 chr6:143656200-143662600 Weak transcription Fetal Brain Female brain
19 chr6:143656200-143662800 Weak transcription HepG2 liver
20 chr6:143658200-143667200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr6:143658400-143662000 Weak transcription HSMMtube muscle
22 chr6:143658400-143670200 Weak transcription NHDF-Ad bronchial
23 chr6:143658600-143664000 Weak transcription HSMM muscle
24 chr6:143658600-143667200 Weak transcription NH-A brain
25 chr6:143658800-143669400 Weak transcription Muscle Satellite Cultured Cells --
26 chr6:143659400-143668400 Weak transcription Fetal Intestine Small intestine
27 chr6:143659600-143661400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr6:143659600-143661400 Enhancers HMEC breast
29 chr6:143659800-143661400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr6:143659800-143661400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr6:143660800-143667200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
32 chr6:143661000-143662400 Weak transcription NHEK skin
33 chr6:143661000-143667200 Weak transcription Osteobl bone
34 chr6:143661000-143669400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015