Variant report

Variant	rs57184543
Chromosome Location	chr6:143589051-143589052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143586956..143589894-chr6:143593616..143595223,2	K562	blood:
2	chr6:143581976..143584706-chr6:143586889..143589875,2	MCF-7	breast:
3	chr6:143587249..143590033-chr6:143590685..143593410,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10080658	1.00[ASN][1000 genomes]
rs13437539	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs28846218	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	1.00[ASN][1000 genomes]
rs59572336	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59940435	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73594139	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73594165	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771499	0.83[AMR][1000 genomes]
rs9484726	1.00[ASN][1000 genomes]
rs9484727	1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496514	1.00[ASN][1000 genomes]
rs9496544	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496548	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496563	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496564	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496580	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	1.00[ASN][1000 genomes]
rs9496586	1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143569000-143592000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:143570800-143609200	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143579800-143589400	Weak transcription	Left Ventricle	heart
4	chr6:143582400-143590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:143582400-143591800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:143582600-143591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:143582600-143591200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:143583400-143606000	Weak transcription	Fetal Intestine Small	intestine
9	chr6:143583800-143615400	Weak transcription	K562	blood
10	chr6:143585800-143592000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:143586800-143591200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:143586800-143592000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:143587000-143590000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:143587000-143591400	Weak transcription	Fetal Lung	lung
15	chr6:143587000-143592000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:143587000-143592000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:143587200-143589200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:143587200-143590800	Weak transcription	NHDF-Ad	bronchial
19	chr6:143587200-143591800	Weak transcription	Ovary	ovary
20	chr6:143587400-143591800	Weak transcription	Fetal Brain Male	brain
21	chr6:143587400-143592000	Weak transcription	HSMM	muscle
22	chr6:143588400-143589600	Enhancers	Fetal Heart	heart
23	chr6:143588400-143590600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:143588800-143590200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr6:143588800-143590200	Enhancers	Fetal Stomach	stomach
26	chr6:143589000-143590000	Weak transcription	Liver	Liver
27	chr6:143589000-143590600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:143589000-143607400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links