Variant report

Variant	rs28846218
Chromosome Location	chr6:143403881-143403882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143395899..143397557-chr6:143402457..143404145,2	MCF-7	breast:

rs_ID	r²[population]
rs13437539	1.00[ASN][1000 genomes]
rs56827403	1.00[ASN][1000 genomes]
rs57184543	1.00[ASN][1000 genomes]
rs59572336	1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	1.00[ASN][1000 genomes]
rs72995085	1.00[ASN][1000 genomes]
rs73594139	1.00[ASN][1000 genomes]
rs73594165	1.00[ASN][1000 genomes]
rs9496514	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496544	1.00[ASN][1000 genomes]
rs9496547	1.00[ASN][1000 genomes]
rs9496548	1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143382600-143426800	Weak transcription	Ovary	ovary
2	chr6:143384200-143407400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:143384200-143407600	Weak transcription	Psoas Muscle	Psoas
4	chr6:143386400-143431800	Weak transcription	NHEK	skin
5	chr6:143389600-143437000	Weak transcription	HSMM	muscle
6	chr6:143389800-143418800	Weak transcription	Osteobl	bone
7	chr6:143395800-143432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:143397400-143431600	Weak transcription	HMEC	breast
9	chr6:143398000-143408000	Weak transcription	Left Ventricle	heart
10	chr6:143398800-143404000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:143400800-143408400	Weak transcription	Fetal Intestine Large	intestine
12	chr6:143400800-143409400	Weak transcription	HepG2	liver
13	chr6:143401200-143408000	Weak transcription	Fetal Intestine Small	intestine
14	chr6:143402000-143412000	Weak transcription	Brain Angular Gyrus	brain
15	chr6:143402200-143405200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:143402200-143407200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:143402200-143418400	Weak transcription	K562	blood
18	chr6:143402600-143404800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:143403200-143404000	Strong transcription	Liver	Liver
20	chr6:143403200-143409600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:143403200-143417400	Weak transcription	Stomach Mucosa	stomach
22	chr6:143403600-143404400	Weak transcription	Brain Anterior Caudate	brain
23	chr6:143403800-143404000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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