The 2.0 version of rSNPBase

Variant report

Variant rs57498557
Chromosome Location chr6:143659185-143659186
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143642600-143675600 Weak transcription Left Ventricle heart
2 chr6:143643800-143661200 Weak transcription Aorta Aorta
3 chr6:143645000-143683200 Weak transcription Pancreas Pancrea
4 chr6:143646000-143664000 Weak transcription Primary neutrophils fromperipheralblood blood
5 chr6:143652400-143662200 Weak transcription Breast Myoepithelial Primary Cells Breast
6 chr6:143652800-143664000 Weak transcription Duodenum Mucosa Duodenum
7 chr6:143653000-143662200 Weak transcription Stomach Smooth Muscle stomach
8 chr6:143653000-143665600 Weak transcription Brain Cingulate Gyrus brain
9 chr6:143653400-143663800 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr6:143653800-143660600 Weak transcription Fetal Stomach stomach
11 chr6:143653800-143661000 Weak transcription Fetal Muscle Leg muscle
12 chr6:143653800-143663400 Weak transcription Fetal Lung lung
13 chr6:143654000-143672000 Weak transcription Ovary ovary
14 chr6:143654200-143661600 Strong transcription Liver Liver
15 chr6:143654400-143667800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr6:143654800-143663600 Weak transcription Fetal Kidney kidney
17 chr6:143655200-143665800 Weak transcription Fetal Intestine Large intestine
18 chr6:143655400-143664400 Weak transcription Fetal Muscle Trunk muscle
19 chr6:143655400-143666000 Weak transcription Brain Hippocampus Middle brain
20 chr6:143655600-143667200 Weak transcription Adipose Nuclei Adipose
21 chr6:143655800-143659200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr6:143656200-143659200 Enhancers HMEC breast
23 chr6:143656200-143662600 Weak transcription Fetal Brain Female brain
24 chr6:143656200-143662800 Weak transcription HepG2 liver
25 chr6:143657000-143659800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr6:143658200-143659400 Enhancers Esophagus oesophagus
27 chr6:143658200-143659400 Strong transcription Fetal Intestine Small intestine
28 chr6:143658200-143659400 Transcr. at gene 5' and 3' NHEK skin
29 chr6:143658200-143667200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr6:143658400-143660000 Weak transcription NHLF lung
31 chr6:143658400-143660200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr6:143658400-143660200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
33 chr6:143658400-143662000 Weak transcription HSMMtube muscle
34 chr6:143658400-143670200 Weak transcription NHDF-Ad bronchial
35 chr6:143658600-143660200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr6:143658600-143660400 Weak transcription Osteobl bone
37 chr6:143658600-143664000 Weak transcription HSMM muscle
38 chr6:143658600-143667200 Weak transcription NH-A brain
39 chr6:143658800-143659800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr6:143658800-143669400 Weak transcription Muscle Satellite Cultured Cells --
41 chr6:143659000-143660400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015