Variant report

Variant	rs9484726
Chromosome Location	chr6:143643505-143643506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143642972..143644703-chr6:143653597..143655440,2	K562	blood:
2	chr6:143640797..143643763-chr6:143645649..143648147,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10080658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13437539	1.00[ASN][1000 genomes]
rs17072448	1.00[ASN][1000 genomes]
rs2146300	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28537733	1.00[ASN][1000 genomes]
rs4467794	1.00[ASN][1000 genomes]
rs55790446	1.00[ASN][1000 genomes]
rs56827403	1.00[ASN][1000 genomes]
rs56884593	1.00[ASN][1000 genomes]
rs57184543	1.00[ASN][1000 genomes]
rs57498557	1.00[ASN][1000 genomes]
rs59134343	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59572336	1.00[ASN][1000 genomes]
rs59940435	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6570553	1.00[ASN][1000 genomes]
rs6935733	1.00[ASN][1000 genomes]
rs73576660	0.88[AFR][1000 genomes]
rs73594139	1.00[ASN][1000 genomes]
rs73594165	1.00[ASN][1000 genomes]
rs7771499	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9484727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9484732	1.00[ASN][1000 genomes]
rs9484734	1.00[ASN][1000 genomes]
rs9484738	1.00[ASN][1000 genomes]
rs9496544	1.00[ASN][1000 genomes]
rs9496547	1.00[ASN][1000 genomes]
rs9496548	1.00[ASN][1000 genomes]
rs9496550	1.00[ASN][1000 genomes]
rs9496551	1.00[ASN][1000 genomes]
rs9496562	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496563	1.00[ASN][1000 genomes]
rs9496564	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496580	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496581	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9496590	1.00[ASN][1000 genomes]
rs9496595	1.00[ASN][1000 genomes]
rs9496596	1.00[ASN][1000 genomes]
rs9496599	1.00[ASN][1000 genomes]
rs9496604	1.00[ASN][1000 genomes]
rs9496608	1.00[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143623200-143644600	Weak transcription	Liver	Liver
2	chr6:143639200-143643800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:143642400-143644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:143642600-143644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:143642600-143675600	Weak transcription	Left Ventricle	heart
6	chr6:143643000-143643600	Enhancers	Fetal Muscle Leg	muscle
7	chr6:143643000-143645600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:143643400-143643800	Enhancers	Ovary	ovary
9	chr6:143643400-143643800	Enhancers	HSMM	muscle
10	chr6:143643400-143644200	Enhancers	NHEK	skin
11	chr6:143643400-143645000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links