Variant report

Variant	rs9496759
Chromosome Location	chr6:144047550-144047551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11962853	1.00[EUR][1000 genomes]
rs2076702	1.00[EUR][1000 genomes]
rs56876317	1.00[EUR][1000 genomes]
rs57100033	1.00[EUR][1000 genomes]
rs59530956	1.00[EUR][1000 genomes]
rs60860852	1.00[EUR][1000 genomes]
rs61181766	1.00[EUR][1000 genomes]
rs6932850	1.00[EUR][1000 genomes]
rs73778677	1.00[EUR][1000 genomes]
rs73778686	1.00[EUR][1000 genomes]
rs9484800	1.00[EUR][1000 genomes]
rs9484801	1.00[EUR][1000 genomes]
rs9484804	1.00[EUR][1000 genomes]
rs9496746	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144011600-144053200	Weak transcription	Hela-S3	cervix
2	chr6:144022200-144052600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:144022800-144052800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr6:144022800-144057200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:144022800-144064200	Weak transcription	NH-A	brain
7	chr6:144023800-144048600	Weak transcription	Psoas Muscle	Psoas
8	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:144024600-144052800	Weak transcription	Osteobl	bone
10	chr6:144025400-144048000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:144027600-144052600	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:144027800-144056000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:144028000-144054600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:144028200-144052800	Weak transcription	Stomach Mucosa	stomach
15	chr6:144029600-144047800	Weak transcription	NHDF-Ad	bronchial
16	chr6:144031000-144054600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:144031000-144062200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:144031400-144054000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:144031600-144047800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:144032800-144049200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr6:144033000-144052600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:144034600-144054800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:144035200-144054400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr6:144035400-144048200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:144035600-144054200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:144036600-144053000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:144038000-144054200	Weak transcription	Right Ventricle	heart
29	chr6:144038200-144063400	Weak transcription	HepG2	liver
30	chr6:144038600-144048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:144038600-144075400	Weak transcription	NHEK	skin
32	chr6:144038800-144053200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:144039400-144047800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr6:144039400-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr6:144039800-144053800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:144039800-144055600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:144040000-144048000	Weak transcription	HUVEC	blood vessel
38	chr6:144041200-144049200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:144041400-144048000	Strong transcription	Placenta	Placenta
40	chr6:144041400-144048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr6:144041800-144047800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:144042000-144051800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:144042000-144063400	Weak transcription	Lung	lung
44	chr6:144042200-144056000	Weak transcription	Liver	Liver
45	chr6:144042400-144053200	Weak transcription	Adipose Nuclei	Adipose
46	chr6:144042800-144048000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr6:144043000-144054400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:144043600-144047800	Strong transcription	Fetal Intestine Large	intestine
49	chr6:144044000-144048200	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:144044600-144048600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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