Variant report

Variant	rs6932850
Chromosome Location	chr6:143902028-143902029
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143899013..143902329-chr6:143903736..143905850,3	K562	blood:

rs_ID	r²[population]
rs2076702	1.00[EUR][1000 genomes]
rs56876317	1.00[EUR][1000 genomes]
rs57100033	1.00[EUR][1000 genomes]
rs59530956	1.00[EUR][1000 genomes]
rs60860852	1.00[EUR][1000 genomes]
rs61181766	1.00[EUR][1000 genomes]
rs73778677	1.00[EUR][1000 genomes]
rs73778686	1.00[EUR][1000 genomes]
rs9386031	1.00[YRI][hapmap]
rs9484800	1.00[EUR][1000 genomes]
rs9484801	1.00[EUR][1000 genomes]
rs9484804	1.00[EUR][1000 genomes]
rs9496746	1.00[EUR][1000 genomes]
rs9496759	1.00[EUR][1000 genomes]

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143866800-143904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:143878800-143902800	Weak transcription	Colonic Mucosa	Colon
3	chr6:143879200-143902800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:143891200-143903200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:143894400-143907600	Weak transcription	Stomach Mucosa	stomach
6	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:143897600-143907600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:143899200-143903200	Enhancers	Placenta	Placenta
9	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
10	chr6:143899800-143902800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:143900400-143907000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr6:143901000-143904400	Weak transcription	NHDF-Ad	bronchial
15	chr6:143901000-143905000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:143901000-143907400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:143901200-143902400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:143901200-143902600	Enhancers	Hela-S3	cervix
19	chr6:143901200-143902800	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:143901200-143903000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:143901200-143903000	Weak transcription	Adipose Nuclei	Adipose
22	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:143901400-143902200	Weak transcription	Left Ventricle	heart
24	chr6:143901400-143902200	Weak transcription	Osteobl	bone
25	chr6:143901400-143902600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:143901400-143903000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:143901400-143903000	Weak transcription	HMEC	breast
28	chr6:143901400-143903000	Weak transcription	NH-A	brain
29	chr6:143901400-143904800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr6:143901400-143906200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr6:143902000-143903400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links