Variant report

Variant	rs9386031
Chromosome Location	chr6:143848315-143848316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143848117..143850404-chr6:144163053..144166032,2	MCF-7	breast:
2	chr6:143845778..143848558-chr6:143857315..143858967,3	MCF-7	breast:
3	chr6:143848305..143850454-chr6:144386141..144388297,2	MCF-7	breast:
4	chr6:143831267..143833119-chr6:143848194..143850202,2	K562	blood:
5	chr6:143831746..143833704-chr6:143846744..143848400,2	MCF-7	breast:
6	chr6:143846773..143853346-chr6:143854519..143860326,12	MCF-7	breast:
7	chr6:143836970..143840867-chr6:143848057..143852037,4	MCF-7	breast:
8	chr6:143831756..143834872-chr6:143844488..143848523,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155298	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12195669	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12524240	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1542622	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1971260	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35991219	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6920034	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7745861	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747351	0.83[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143833400-143849400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:143835000-143850000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143836800-143848400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:143846800-143849400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:143847000-143849000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:143847400-143848800	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr6:143847400-143849200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr6:143847400-143849400	Weak transcription	Duodenum Smooth Muscle	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links