Variant report

Variant	rs7745861
Chromosome Location	chr6:143843362-143843363
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10457748	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11155298	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195669	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524240	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1542622	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1971260	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35991219	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6920034	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[GIH][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes]
rs7747351	0.85[ASN][1000 genomes]
rs9386031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7745861	GPR126	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143833400-143849400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:143835000-143850000	Weak transcription	Fetal Intestine Large	intestine
5	chr6:143836800-143848400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:143842600-143843600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:143842600-143844200	Enhancers	Fetal Heart	heart
8	chr6:143842800-143843600	Bivalent Enhancer	HepG2	liver
9	chr6:143842800-143844400	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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