Variant report

Variant	rs9496880
Chromosome Location	chr6:144465414-144465415
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12174731	0.82[EUR][1000 genomes]
rs9386060	0.82[EUR][1000 genomes]
rs9390157	0.84[CEU][hapmap]
rs9399471	0.82[EUR][1000 genomes]
rs9496879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9496880	PLAGL1	cis	multi-tissue	Pritchard

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144460000-144466000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:144463000-144470600	Weak transcription	GM12878-XiMat	blood
3	chr6:144463200-144470600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:144464000-144466600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:144465200-144465600	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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