Variant report

Variant	rs9496891
Chromosome Location	chr6:144508593-144508594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9496893	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144479000-144511800	Weak transcription	Psoas Muscle	Psoas
3	chr6:144488800-144510000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:144497400-144508600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:144499600-144511000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:144501400-144512400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:144502600-144509600	Weak transcription	Primary B cells from cord blood	blood
11	chr6:144504000-144511800	Weak transcription	Right Atrium	heart
12	chr6:144505400-144512000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:144505600-144511400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:144506200-144515600	Weak transcription	Fetal Heart	heart
15	chr6:144506600-144517000	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:144507000-144512200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:144507200-144511400	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:144507600-144508800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
19	chr6:144507600-144509000	ZNF genes & repeats	GM12878-XiMat	blood
20	chr6:144507600-144509200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:144507600-144509800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr6:144507800-144508600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:144507800-144508600	ZNF genes & repeats	Placenta	Placenta
24	chr6:144507800-144508600	ZNF genes & repeats	Thymus	Thymus
25	chr6:144507800-144508800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:144507800-144508800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:144507800-144508800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:144507800-144508800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:144507800-144508800	ZNF genes & repeats	Gastric	stomach
30	chr6:144507800-144508800	ZNF genes & repeats	Lung	lung
31	chr6:144507800-144509000	Strong transcription	Primary B cells from peripheral blood	blood
32	chr6:144507800-144509000	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:144507800-144509000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:144507800-144509000	Strong transcription	Duodenum Mucosa	Duodenum
35	chr6:144507800-144509000	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:144507800-144509000	ZNF genes & repeats	Esophagus	oesophagus
37	chr6:144507800-144509000	Strong transcription	Left Ventricle	heart
38	chr6:144507800-144509000	Strong transcription	Right Ventricle	heart
39	chr6:144507800-144509200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr6:144507800-144509200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr6:144507800-144509200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr6:144507800-144509200	Strong transcription	Adipose Nuclei	Adipose
43	chr6:144507800-144509200	ZNF genes & repeats	Spleen	Spleen
44	chr6:144507800-144509400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:144508000-144508600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr6:144508000-144508800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:144508000-144508800	ZNF genes & repeats	Pancreas	Pancrea
48	chr6:144508000-144508800	ZNF genes & repeats	HUVEC	blood vessel
49	chr6:144508000-144508800	Strong transcription	NHLF	lung
50	chr6:144508000-144509200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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