Variant report

Variant	rs9496893
Chromosome Location	chr6:144513361-144513362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144509634..144515392-chr6:144515473..144518844,5	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9496891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067917	chr6:144498026-144517214	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144473400-144513800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:144500800-144518800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr6:144501200-144520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:144501600-144519400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:144506200-144515600	Weak transcription	Fetal Heart	heart
6	chr6:144506600-144517000	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:144508200-144516200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:144508800-144520000	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:144509000-144520000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:144509000-144520000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:144509200-144517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:144509200-144519200	Weak transcription	Spleen	Spleen
13	chr6:144509400-144520200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:144509600-144517000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:144509800-144519400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:144511400-144513400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:144512000-144518200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:144512200-144513400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr6:144512200-144515000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:144512200-144515600	Weak transcription	Placenta	Placenta
21	chr6:144512200-144516000	Weak transcription	Esophagus	oesophagus
22	chr6:144512200-144516200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:144512200-144516400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:144512200-144516800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:144512200-144516800	Weak transcription	HMEC	breast
26	chr6:144512200-144516800	Weak transcription	NHLF	lung
27	chr6:144512200-144517000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:144513200-144513400	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links