Variant report

Variant	rs9496907
Chromosome Location	chr6:144578226-144578227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs9484854	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484855	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484856	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484857	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484858	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484859	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9484860	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496903	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496904	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496905	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496906	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496911	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496912	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496913	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9496915	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs960245	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144569400-144581800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:144571600-144581800	Weak transcription	HSMMtube	muscle
4	chr6:144574000-144578400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:144577600-144578800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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